Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AL121603.2-201ENST00000557373 2117 ntBASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLIP3Q96DZ5 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLIP3Q96DZ5 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 AC092068.2-201ENST00000590491 1708 ntBASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 TERF1P2-201ENST00000583350 1212 ntBASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.73■□□□□ 0.91
CLIP3Q96DZ5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 AC022517.1-201ENST00000592429 346 ntBASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.72■□□□□ 0.91
CLIP3Q96DZ5 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 NTF6G-201ENST00000591094 616 ntBASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLIP3Q96DZ5 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.7■□□□□ 0.9
CLIP3Q96DZ5 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 OXCT2P1-201ENST00000447263 1535 ntBASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 BX005040.4-201ENST00000637145 1518 ntBASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 IKBKGP1-201ENST00000612193 1073 ntBASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLIP3Q96DZ5 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms