Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX4Q33E94 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.04■□□□□ 0.8
RFX4Q33E94 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
RFX4Q33E94 AC009086.3-201ENST00000623486 1008 ntBASIC20.04■□□□□ 0.8
RFX4Q33E94 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX4Q33E94 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFX4Q33E94 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RFX4Q33E94 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX4Q33E94 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX4Q33E94 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX4Q33E94 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
RFX4Q33E94 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 AC005703.6-201ENST00000623265 1329 ntBASIC20.03■□□□□ 0.8
RFX4Q33E94 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.03■□□□□ 0.8
RFX4Q33E94 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.03■□□□□ 0.8
RFX4Q33E94 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.03■□□□□ 0.8
RFX4Q33E94 CA15P2-201ENST00000611168 834 ntBASIC20.03■□□□□ 0.8
RFX4Q33E94 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RFX4Q33E94 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
RFX4Q33E94 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX4Q33E94 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RFX4Q33E94 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 AC021242.3-201ENST00000607598 1377 ntBASIC20.02■□□□□ 0.8
RFX4Q33E94 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
RFX4Q33E94 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.02■□□□□ 0.8
RFX4Q33E94 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.02■□□□□ 0.8
RFX4Q33E94 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFX4Q33E94 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.02■□□□□ 0.79
RFX4Q33E94 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
RFX4Q33E94 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RFX4Q33E94 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RFX4Q33E94 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.01■□□□□ 0.79
RFX4Q33E94 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RFX4Q33E94 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.01■□□□□ 0.79
RFX4Q33E94 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.01■□□□□ 0.79
RFX4Q33E94 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.01■□□□□ 0.79
RFX4Q33E94 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
RFX4Q33E94 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.01■□□□□ 0.79
RFX4Q33E94 FEM1AP4-201ENST00000443167 1987 ntBASIC20.01■□□□□ 0.79
RFX4Q33E94 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX4Q33E94 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20■□□□□ 0.79
RFX4Q33E94 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20■□□□□ 0.79
RFX4Q33E94 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20■□□□□ 0.79
RFX4Q33E94 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
RFX4Q33E94 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
RFX4Q33E94 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20■□□□□ 0.79
RFX4Q33E94 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFX4Q33E94 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX4Q33E94 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.99■□□□□ 0.79
RFX4Q33E94 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RFX4Q33E94 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX4Q33E94 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.99■□□□□ 0.79
RFX4Q33E94 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
RFX4Q33E94 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
RFX4Q33E94 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX4Q33E94 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX4Q33E94 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX4Q33E94 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.99■□□□□ 0.79
RFX4Q33E94 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.99■□□□□ 0.79
RFX4Q33E94 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.99■□□□□ 0.79
RFX4Q33E94 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.98■□□□□ 0.79
RFX4Q33E94 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.98■□□□□ 0.79
RFX4Q33E94 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX4Q33E94 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.98■□□□□ 0.79
RFX4Q33E94 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
RFX4Q33E94 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX4Q33E94 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RFX4Q33E94 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RFX4Q33E94 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
RFX4Q33E94 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms