Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 AC079089.2-201ENST00000531211 1277 ntBASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 LINC00526-201ENST00000581067 1875 ntBASIC25.4■■□□□ 1.66
SHROOM1Q2M3G4 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC25.39■■□□□ 1.66
SHROOM1Q2M3G4 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SHROOM1Q2M3G4 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
SHROOM1Q2M3G4 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
SHROOM1Q2M3G4 KRT87P-202ENST00000534226 1464 ntBASIC25.39■■□□□ 1.65
SHROOM1Q2M3G4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.65
SHROOM1Q2M3G4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 AC104771.1-201ENST00000603335 964 ntBASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SHROOM1Q2M3G4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 AC009237.3-201ENST00000393279 1427 ntBASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SHROOM1Q2M3G4 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 MIR663A-201ENST00000385250 93 ntBASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 UBE2DNL-204ENST00000602536 740 ntBASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SHROOM1Q2M3G4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
SHROOM1Q2M3G4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 AL050303.2-201ENST00000619798 666 ntBASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SHROOM1Q2M3G4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 AP004607.7-201ENST00000527152 1677 ntBASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 AC087742.1-201ENST00000575880 1738 ntBASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC25.33■■□□□ 1.65
SHROOM1Q2M3G4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.64
SHROOM1Q2M3G4 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 AC006970.2-201ENST00000450065 779 ntBASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms