Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 tC(GCA)GtC(GCA)G 72 nt3.43□□□□□ -1.86
YNL040WP53960 tC(GCA)P1tC(GCA)P1 72 nt3.43□□□□□ -1.86
YNL040WP53960 tC(GCA)P2tC(GCA)P2 72 nt3.43□□□□□ -1.86
YNL040WP53960 ERJ5YFR041C 888 nt3.43□□□□□ -1.86
YNL040WP53960 YGL118CYGL118C 438 nt3.43□□□□□ -1.86
YNL040WP53960 GTT1YIR038C 705 nt3.43□□□□□ -1.86
YNL040WP53960 HTA2YBL003C 399 nt3.43□□□□□ -1.86
YNL040WP53960 YLR428CYLR428C 345 nt3.43□□□□□ -1.86
YNL040WP53960 GOT1YMR292W 417 nt3.43□□□□□ -1.86
YNL040WP53960 YNR068CYNR068C 819 nt3.43□□□□□ -1.86
YNL040WP53960 VPS21YOR089C 633 nt3.43□□□□□ -1.86
YNL040WP53960 VPS28YPL065W 729 nt3.43□□□□□ -1.86
YNL040WP53960 PMS1YNL082W 2622 nt3.43□□□□□ -1.86
YNL040WP53960 AKR1YDR264C 2295 nt3.42□□□□□ -1.86
YNL040WP53960 CEX1YOR112W 2286 nt3.42□□□□□ -1.86
YNL040WP53960 AUS1YOR011W 4185 nt3.42□□□□□ -1.86
YNL040WP53960 ARP4YJL081C 1470 nt3.42□□□□□ -1.86
YNL040WP53960 GTF1YGR102C 552 nt3.42□□□□□ -1.86
YNL040WP53960 YJL028WYJL028W 336 nt3.42□□□□□ -1.86
YNL040WP53960 SFH5YJL145W 885 nt3.42□□□□□ -1.86
YNL040WP53960 MSA2YKR077W 1092 nt3.42□□□□□ -1.86
YNL040WP53960 YMR122W-AYMR122W-A 255 nt3.42□□□□□ -1.86
YNL040WP53960 PRX1YBL064C 786 nt3.42□□□□□ -1.86
YNL040WP53960 MRPL51YPR100W 423 nt3.42□□□□□ -1.86
YNL040WP53960 snR34snR34 203 nt3.42□□□□□ -1.86
YNL040WP53960 FRM2YCL026C-A 582 nt3.42□□□□□ -1.86
YNL040WP53960 TGL3YMR313C 1929 nt3.42□□□□□ -1.86
YNL040WP53960 MNR2YKL064W 2910 nt3.42□□□□□ -1.86
YNL040WP53960 POL31YJR006W 1464 nt3.41□□□□□ -1.86
YNL040WP53960 BAR1YIL015W 1764 nt3.41□□□□□ -1.86
YNL040WP53960 CSR2YPR030W 3366 nt3.41□□□□□ -1.86
YNL040WP53960 TFB2YPL122C 1542 nt3.41□□□□□ -1.86
YNL040WP53960 DIN7YDR263C 1293 nt3.41□□□□□ -1.86
YNL040WP53960 YDR431WYDR431W 312 nt3.41□□□□□ -1.86
YNL040WP53960 EDC1YGL222C 528 nt3.41□□□□□ -1.86
YNL040WP53960 SDT1YGL224C 843 nt3.41□□□□□ -1.86
YNL040WP53960 SPO16YHR153C 597 nt3.41□□□□□ -1.86
YNL040WP53960 RSM25YIL093C 795 nt3.41□□□□□ -1.86
YNL040WP53960 YLR225CYLR225C 1224 nt3.41□□□□□ -1.86
YNL040WP53960 RHO5YNL180C 996 nt3.41□□□□□ -1.86
YNL040WP53960 AIM39YOL053W 1188 nt3.41□□□□□ -1.86
YNL040WP53960 RSF2YJR127C 4143 nt3.41□□□□□ -1.86
YNL040WP53960 VPS27YNR006W 1869 nt3.41□□□□□ -1.86
YNL040WP53960 REC8YPR007C 2043 nt3.41□□□□□ -1.86
YNL040WP53960 FMP10YER182W 735 nt3.4□□□□□ -1.87
YNL040WP53960 CLC1YGR167W 702 nt3.4□□□□□ -1.87
YNL040WP53960 AIM22YJL046W 1230 nt3.4□□□□□ -1.87
YNL040WP53960 NUP85YJR042W 2235 nt3.4□□□□□ -1.87
YNL040WP53960 IMH1YLR309C 2736 nt3.4□□□□□ -1.87
YNL040WP53960 SUP45YBR143C 1314 nt3.4□□□□□ -1.87
YNL040WP53960 RAD7YJR052W 1698 nt3.39□□□□□ -1.87
YNL040WP53960 YTA7YGR270W 4140 nt3.39□□□□□ -1.87
YNL040WP53960 OPI6YDL096C 327 nt3.39□□□□□ -1.87
YNL040WP53960 ECO1YFR027W 846 nt3.39□□□□□ -1.87
YNL040WP53960 YGL082WYGL082W 1146 nt3.39□□□□□ -1.87
YNL040WP53960 PET54YGR222W 882 nt3.39□□□□□ -1.87
YNL040WP53960 COS8YHL048W 1146 nt3.39□□□□□ -1.87
YNL040WP53960 CDA2YLR308W 939 nt3.39□□□□□ -1.87
YNL040WP53960 YML053CYML053C 639 nt3.39□□□□□ -1.87
YNL040WP53960 FES1YBR101C 873 nt3.39□□□□□ -1.87
YNL040WP53960 FLO9YAL063C 3969 nt3.39□□□□□ -1.87
YNL040WP53960 LCB5YLR260W 2064 nt3.39□□□□□ -1.87
YNL040WP53960 DRS2YAL026C 4068 nt3.38□□□□□ -1.87
YNL040WP53960 MCM21YDR318W 1107 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)DtK(UUU)D 73 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)G1tK(UUU)G1 73 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)G2tK(UUU)G2 73 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)KtK(UUU)K 73 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)LtK(UUU)L 73 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)OtK(UUU)O 73 nt3.38□□□□□ -1.87
YNL040WP53960 tK(UUU)PtK(UUU)P 73 nt3.38□□□□□ -1.87
YNL040WP53960 YHI9YHR029C 885 nt3.38□□□□□ -1.87
YNL040WP53960 YIL089WYIL089W 618 nt3.38□□□□□ -1.87
YNL040WP53960 FOL3YMR113W 1284 nt3.38□□□□□ -1.87
YNL040WP53960 SPT16YGL207W 3108 nt3.38□□□□□ -1.87
YNL040WP53960 YDL176WYDL176W 2127 nt3.38□□□□□ -1.87
YNL040WP53960 GSC2YGR032W 5688 nt3.38□□□□□ -1.87
YNL040WP53960 TDA3YHR009C 1572 nt3.38□□□□□ -1.87
YNL040WP53960 FLO10YKR102W 3510 nt3.37□□□□□ -1.87
YNL040WP53960 USE1YGL098W 738 nt3.37□□□□□ -1.87
YNL040WP53960 YAL064W-BYAL064W-B 381 nt3.37□□□□□ -1.87
YNL040WP53960 YAL065CYAL065C 387 nt3.37□□□□□ -1.87
YNL040WP53960 HUT1YPL244C 1020 nt3.37□□□□□ -1.87
YNL040WP53960 PTM1YKL039W 1572 nt3.37□□□□□ -1.87
YNL040WP53960 AIM14YGL160W 1713 nt3.36□□□□□ -1.87
YNL040WP53960 RRP5YMR229C 5190 nt3.36□□□□□ -1.87
YNL040WP53960 PRS5YOL061W 1491 nt3.36□□□□□ -1.87
YNL040WP53960 MED2YDL005C 1296 nt3.36□□□□□ -1.87
YNL040WP53960 YGL101WYGL101W 648 nt3.36□□□□□ -1.87
YNL040WP53960 ARC15YIL062C 465 nt3.36□□□□□ -1.87
YNL040WP53960 YNR071CYNR071C 1029 nt3.36□□□□□ -1.87
YNL040WP53960 DIB1YPR082C 432 nt3.36□□□□□ -1.87
YNL040WP53960 YBR103C-AYBR103C-A 144 nt3.36□□□□□ -1.87
YNL040WP53960 RTS1YOR014W 2274 nt3.36□□□□□ -1.87
YNL040WP53960 FUN12YAL035W 3009 nt3.35□□□□□ -1.87
YNL040WP53960 YDL032WYDL032W 312 nt3.35□□□□□ -1.87
YNL040WP53960 DUO1YGL061C 744 nt3.35□□□□□ -1.87
YNL040WP53960 AGE2YIL044C 897 nt3.35□□□□□ -1.87
YNL040WP53960 NIP7YPL211W 546 nt3.35□□□□□ -1.87
YNL040WP53960 KTR6YPL053C 1341 nt3.35□□□□□ -1.87
Retrieved 100 of 7,029 protein–RNA pairs in 15.1 ms