Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIMS1P48059 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
LIMS1P48059 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS1P48059 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS1P48059 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS1P48059 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LIMS1P48059 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIMS1P48059 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMS1P48059 AC019069.1-201ENST00000610008 1333 ntBASIC19.78■□□□□ 0.76
LIMS1P48059 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
LIMS1P48059 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 SLC25A24-204ENST00000569674 2357 ntBASIC19.78■□□□□ 0.76
LIMS1P48059 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.78■□□□□ 0.76
LIMS1P48059 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMS1P48059 AC079089.2-201ENST00000531211 1277 ntBASIC19.78■□□□□ 0.76
LIMS1P48059 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMS1P48059 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMS1P48059 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIMS1P48059 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LIMS1P48059 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
LIMS1P48059 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMS1P48059 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LIMS1P48059 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LIMS1P48059 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.77■□□□□ 0.76
LIMS1P48059 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 AC131212.1-201ENST00000613771 668 ntBASIC19.77■□□□□ 0.76
LIMS1P48059 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
LIMS1P48059 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMS1P48059 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMS1P48059 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LIMS1P48059 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIMS1P48059 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LIMS1P48059 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIMS1P48059 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMS1P48059 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMS1P48059 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS1P48059 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS1P48059 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMS1P48059 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LIMS1P48059 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMS1P48059 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS1P48059 UNC93B8-201ENST00000511903 705 ntBASIC19.75■□□□□ 0.75
LIMS1P48059 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
LIMS1P48059 MIR6724-1-201ENST00000616420 92 ntBASIC19.75■□□□□ 0.75
LIMS1P48059 MIR6724-2-201ENST00000616483 92 ntBASIC19.75■□□□□ 0.75
LIMS1P48059 MIR6724-4-201ENST00000617390 92 ntBASIC19.75■□□□□ 0.75
LIMS1P48059 MIR6724-3-201ENST00000622482 92 ntBASIC19.75■□□□□ 0.75
LIMS1P48059 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMS1P48059 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LIMS1P48059 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
LIMS1P48059 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMS1P48059 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS1P48059 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS1P48059 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMS1P48059 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 AC073130.3-201ENST00000624389 2278 ntBASIC19.74■□□□□ 0.75
LIMS1P48059 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
LIMS1P48059 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMS1P48059 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMS1P48059 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMS1P48059 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMS1P48059 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMS1P48059 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
LIMS1P48059 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMS1P48059 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS1P48059 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
LIMS1P48059 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS1P48059 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMS1P48059 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMS1P48059 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms