Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RAF1P04049 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
RAF1P04049 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
RAF1P04049 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.46■□□□□ 0.71
RAF1P04049 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
RAF1P04049 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.46■□□□□ 0.71
RAF1P04049 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RAF1P04049 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
RAF1P04049 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.46■□□□□ 0.71
RAF1P04049 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RAF1P04049 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
RAF1P04049 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAF1P04049 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.45■□□□□ 0.7
RAF1P04049 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.45■□□□□ 0.7
RAF1P04049 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.45■□□□□ 0.7
RAF1P04049 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.45■□□□□ 0.7
RAF1P04049 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 AC022517.1-201ENST00000592429 346 ntBASIC19.45■□□□□ 0.7
RAF1P04049 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RAF1P04049 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RAF1P04049 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RAF1P04049 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAF1P04049 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAF1P04049 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
RAF1P04049 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.44■□□□□ 0.7
RAF1P04049 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.44■□□□□ 0.7
RAF1P04049 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.44■□□□□ 0.7
RAF1P04049 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.44■□□□□ 0.7
RAF1P04049 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.44■□□□□ 0.7
RAF1P04049 IKBKGP1-201ENST00000612193 1073 ntBASIC19.44■□□□□ 0.7
RAF1P04049 AC009086.3-201ENST00000623486 1008 ntBASIC19.44■□□□□ 0.7
RAF1P04049 AL353803.4-201ENST00000565882 1934 ntBASIC19.44■□□□□ 0.7
RAF1P04049 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RAF1P04049 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.44■□□□□ 0.7
RAF1P04049 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RAF1P04049 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RAF1P04049 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.44■□□□□ 0.7
RAF1P04049 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAF1P04049 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAF1P04049 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.43■□□□□ 0.7
RAF1P04049 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.43■□□□□ 0.7
RAF1P04049 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.43■□□□□ 0.7
RAF1P04049 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.43■□□□□ 0.7
RAF1P04049 AC139530.1-201ENST00000575312 1977 ntBASIC19.43■□□□□ 0.7
RAF1P04049 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
RAF1P04049 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.43■□□□□ 0.7
RAF1P04049 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.43■□□□□ 0.7
RAF1P04049 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.43■□□□□ 0.7
RAF1P04049 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.43■□□□□ 0.7
RAF1P04049 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAF1P04049 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.42■□□□□ 0.7
RAF1P04049 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.42■□□□□ 0.7
RAF1P04049 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RAF1P04049 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.42■□□□□ 0.7
RAF1P04049 C11orf96-202ENST00000528572 1834 ntBASIC19.42■□□□□ 0.7
RAF1P04049 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
RAF1P04049 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RAF1P04049 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 YBX1P1-201ENST00000445822 960 ntBASIC19.42■□□□□ 0.7
RAF1P04049 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.42■□□□□ 0.7
RAF1P04049 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAF1P04049 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RAF1P04049 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAF1P04049 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 426.7 ms