Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.53■□□□□ 0.88
CPSF4O95639 AC099791.2-201ENST00000605725 427 ntBASIC20.53■□□□□ 0.88
CPSF4O95639 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CPSF4O95639 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.52■□□□□ 0.88
CPSF4O95639 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.52■□□□□ 0.88
CPSF4O95639 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.52■□□□□ 0.88
CPSF4O95639 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CPSF4O95639 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CPSF4O95639 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CPSF4O95639 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CPSF4O95639 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CPSF4O95639 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4O95639 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4O95639 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4O95639 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4O95639 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.51■□□□□ 0.87
CPSF4O95639 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.51■□□□□ 0.87
CPSF4O95639 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.51■□□□□ 0.87
CPSF4O95639 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4O95639 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CPSF4O95639 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
CPSF4O95639 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4O95639 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CPSF4O95639 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4O95639 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CPSF4O95639 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CPSF4O95639 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.5■□□□□ 0.87
CPSF4O95639 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4O95639 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.5■□□□□ 0.87
CPSF4O95639 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4O95639 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4O95639 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CPSF4O95639 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CPSF4O95639 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CPSF4O95639 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CPSF4O95639 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.49■□□□□ 0.87
CPSF4O95639 GUSBP5-201ENST00000418136 578 ntBASIC20.49■□□□□ 0.87
CPSF4O95639 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.49■□□□□ 0.87
CPSF4O95639 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.49■□□□□ 0.87
CPSF4O95639 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.49■□□□□ 0.87
CPSF4O95639 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CPSF4O95639 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
CPSF4O95639 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CPSF4O95639 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CPSF4O95639 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4O95639 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CPSF4O95639 AC026310.3-201ENST00000625186 2373 ntBASIC20.48■□□□□ 0.87
CPSF4O95639 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4O95639 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CPSF4O95639 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4O95639 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4O95639 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.48■□□□□ 0.87
CPSF4O95639 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CPSF4O95639 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CPSF4O95639 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4O95639 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
CPSF4O95639 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.47■□□□□ 0.87
CPSF4O95639 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4O95639 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CPSF4O95639 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4O95639 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4O95639 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
CPSF4O95639 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.47■□□□□ 0.87
CPSF4O95639 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4O95639 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.47■□□□□ 0.87
CPSF4O95639 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.47■□□□□ 0.87
CPSF4O95639 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.47■□□□□ 0.87
CPSF4O95639 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CPSF4O95639 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
CPSF4O95639 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.46■□□□□ 0.87
CPSF4O95639 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4O95639 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4O95639 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CPSF4O95639 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms