Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS4BO75351 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS4BO75351 AC097381.1-201ENST00000429019 1296 ntBASIC21.13■□□□□ 0.97
VPS4BO75351 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.13■□□□□ 0.97
VPS4BO75351 DUX4L19-201ENST00000557448 1267 ntBASIC21.13■□□□□ 0.97
VPS4BO75351 CA15P2-201ENST00000611168 834 ntBASIC21.13■□□□□ 0.97
VPS4BO75351 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.13■□□□□ 0.97
VPS4BO75351 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS4BO75351 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS4BO75351 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS4BO75351 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS4BO75351 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS4BO75351 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS4BO75351 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS4BO75351 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS4BO75351 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS4BO75351 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS4BO75351 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS4BO75351 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS4BO75351 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS4BO75351 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS4BO75351 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS4BO75351 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS4BO75351 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.11■□□□□ 0.97
VPS4BO75351 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS4BO75351 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS4BO75351 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
VPS4BO75351 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS4BO75351 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS4BO75351 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS4BO75351 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS4BO75351 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
VPS4BO75351 AC091305.1-201ENST00000479476 895 ntBASIC21.1■□□□□ 0.97
VPS4BO75351 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS4BO75351 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS4BO75351 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS4BO75351 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS4BO75351 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS4BO75351 AC010542.4-201ENST00000563151 1910 ntBASIC21.1■□□□□ 0.97
VPS4BO75351 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
VPS4BO75351 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VPS4BO75351 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS4BO75351 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS4BO75351 MIR939-201ENST00000401314 82 ntBASIC21.09■□□□□ 0.97
VPS4BO75351 AL162430.1-201ENST00000480705 870 ntBASIC21.09■□□□□ 0.97
VPS4BO75351 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS4BO75351 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS4BO75351 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS4BO75351 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VPS4BO75351 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS4BO75351 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS4BO75351 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
VPS4BO75351 AC004687.1-201ENST00000579003 1625 ntBASIC21.08■□□□□ 0.97
VPS4BO75351 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS4BO75351 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.08■□□□□ 0.97
VPS4BO75351 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.08■□□□□ 0.97
VPS4BO75351 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.08■□□□□ 0.97
VPS4BO75351 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS4BO75351 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS4BO75351 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS4BO75351 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS4BO75351 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
VPS4BO75351 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.08■□□□□ 0.96
VPS4BO75351 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS4BO75351 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.08■□□□□ 0.96
VPS4BO75351 AC009102.2-201ENST00000606772 1639 ntBASIC21.07■□□□□ 0.96
VPS4BO75351 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS4BO75351 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.07■□□□□ 0.96
VPS4BO75351 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.07■□□□□ 0.96
VPS4BO75351 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS4BO75351 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS4BO75351 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS4BO75351 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
VPS4BO75351 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
VPS4BO75351 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS4BO75351 AP001330.3-201ENST00000520123 633 ntBASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms