Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
LMX1BO60663 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.96■□□□□ 0.63
LMX1BO60663 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC18.96■□□□□ 0.63
LMX1BO60663 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.96■□□□□ 0.63
LMX1BO60663 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LMX1BO60663 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.96■□□□□ 0.63
LMX1BO60663 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
LMX1BO60663 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
LMX1BO60663 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.96■□□□□ 0.63
LMX1BO60663 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
LMX1BO60663 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LMX1BO60663 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.95■□□□□ 0.62
LMX1BO60663 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.95■□□□□ 0.62
LMX1BO60663 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1BO60663 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1BO60663 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
LMX1BO60663 MIR4767-201ENST00000582827 78 ntBASIC18.95■□□□□ 0.62
LMX1BO60663 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.95■□□□□ 0.62
LMX1BO60663 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1BO60663 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1BO60663 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1BO60663 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LMX1BO60663 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.95■□□□□ 0.62
LMX1BO60663 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.94■□□□□ 0.62
LMX1BO60663 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 FAM99A-202ENST00000538190 1989 ntBASIC18.94■□□□□ 0.62
LMX1BO60663 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
LMX1BO60663 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1BO60663 AC097381.1-201ENST00000429019 1296 ntBASIC18.94■□□□□ 0.62
LMX1BO60663 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1BO60663 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LMX1BO60663 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LMX1BO60663 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LMX1BO60663 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.94■□□□□ 0.62
LMX1BO60663 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.93■□□□□ 0.62
LMX1BO60663 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1BO60663 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LMX1BO60663 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1BO60663 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1BO60663 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.93■□□□□ 0.62
LMX1BO60663 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1BO60663 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LMX1BO60663 RASA4CP-201ENST00000424092 1398 ntBASIC18.93■□□□□ 0.62
LMX1BO60663 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LMX1BO60663 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 CA15P2-201ENST00000611168 834 ntBASIC18.92■□□□□ 0.62
LMX1BO60663 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
LMX1BO60663 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
LMX1BO60663 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.92■□□□□ 0.62
LMX1BO60663 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LMX1BO60663 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 AC026310.3-201ENST00000625186 2373 ntBASIC18.91■□□□□ 0.62
LMX1BO60663 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LMX1BO60663 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.91■□□□□ 0.62
LMX1BO60663 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LMX1BO60663 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC18.9■□□□□ 0.62
LMX1BO60663 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LMX1BO60663 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LMX1BO60663 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LMX1BO60663 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LMX1BO60663 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.9■□□□□ 0.62
LMX1BO60663 AC027682.1-201ENST00000562846 899 ntBASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms