Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
HMGN4O00479 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGN4O00479 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGN4O00479 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
HMGN4O00479 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGN4O00479 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.14■□□□□ 0.81
HMGN4O00479 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGN4O00479 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC20.14■□□□□ 0.81
HMGN4O00479 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HMGN4O00479 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGN4O00479 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGN4O00479 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 OR7E47P-201ENST00000546390 1422 ntBASIC20.13■□□□□ 0.81
HMGN4O00479 AC026310.3-201ENST00000625186 2373 ntBASIC20.13■□□□□ 0.81
HMGN4O00479 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGN4O00479 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGN4O00479 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 DUX4L19-201ENST00000557448 1267 ntBASIC20.13■□□□□ 0.81
HMGN4O00479 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGN4O00479 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
HMGN4O00479 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGN4O00479 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HMGN4O00479 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGN4O00479 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGN4O00479 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGN4O00479 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGN4O00479 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGN4O00479 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGN4O00479 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGN4O00479 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGN4O00479 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGN4O00479 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HMGN4O00479 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HMGN4O00479 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGN4O00479 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGN4O00479 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGN4O00479 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HMGN4O00479 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HMGN4O00479 AC087239.1-201ENST00000622671 572 ntBASIC20.11■□□□□ 0.81
HMGN4O00479 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGN4O00479 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HMGN4O00479 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
HMGN4O00479 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
HMGN4O00479 AC244015.2-201ENST00000616358 1861 ntBASIC20.11■□□□□ 0.81
HMGN4O00479 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGN4O00479 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
HMGN4O00479 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGN4O00479 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
HMGN4O00479 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
HMGN4O00479 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
HMGN4O00479 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGN4O00479 AC010141.3-201ENST00000456659 717 ntBASIC20.1■□□□□ 0.81
HMGN4O00479 AC011298.3-201ENST00000615796 283 ntBASIC20.1■□□□□ 0.81
HMGN4O00479 AC136469.2-201ENST00000623944 1028 ntBASIC20.1■□□□□ 0.81
HMGN4O00479 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGN4O00479 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGN4O00479 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGN4O00479 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HMGN4O00479 AC026471.6-201ENST00000622954 1905 ntBASIC20.1■□□□□ 0.81
HMGN4O00479 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
HMGN4O00479 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGN4O00479 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGN4O00479 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.09■□□□□ 0.81
HMGN4O00479 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGN4O00479 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HMGN4O00479 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.09■□□□□ 0.81
HMGN4O00479 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGN4O00479 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.09■□□□□ 0.81
HMGN4O00479 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HMGN4O00479 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
HMGN4O00479 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HMGN4O00479 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.09■□□□□ 0.81
HMGN4O00479 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGN4O00479 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HMGN4O00479 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
HMGN4O00479 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.08■□□□□ 0.81
HMGN4O00479 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGN4O00479 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
HMGN4O00479 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.08■□□□□ 0.81
HMGN4O00479 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HMGN4O00479 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
HMGN4O00479 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HMGN4O00479 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HMGN4O00479 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.08■□□□□ 0.8
HMGN4O00479 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 OXCT2P1-201ENST00000447263 1535 ntBASIC20.07■□□□□ 0.8
HMGN4O00479 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HMGN4O00479 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms