Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 AC079140.4-201ENST00000507448 529 ntBASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 AL137784.2-201ENST00000607332 1000 ntBASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SMIM28A0A1B0GU29 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
SMIM28A0A1B0GU29 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.28■■□□□ 1.32
SMIM28A0A1B0GU29 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
SMIM28A0A1B0GU29 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 AC055733.4-201ENST00000638462 1354 ntBASIC23.26■■□□□ 1.31
SMIM28A0A1B0GU29 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 C1orf229-201ENST00000623686 2258 ntBASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
SMIM28A0A1B0GU29 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 AC004911.1-201ENST00000416316 871 ntBASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMIM28A0A1B0GU29 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 AC139530.1-201ENST00000575312 1977 ntBASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMIM28A0A1B0GU29 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SMIM28A0A1B0GU29 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 AL034346.1-201ENST00000568244 1277 ntBASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SMIM28A0A1B0GU29 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms