Protein–RNA interactions for Protein: Q08423

Tff1, Trefoil factor 1, mousemouse

Predictions only

Length 87 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tff1Q08423 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC20.77■□□□□ 0.92
Tff1Q08423 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Tff1Q08423 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Tff1Q08423 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Tff1Q08423 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Tff1Q08423 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Tff1Q08423 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Tff1Q08423 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Tff1Q08423 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Tff1Q08423 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Tff1Q08423 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Tff1Q08423 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Tff1Q08423 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Tff1Q08423 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Tff1Q08423 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.69■□□□□ 0.9
Tff1Q08423 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Tff1Q08423 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Tff1Q08423 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Tff1Q08423 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tff1Q08423 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Tff1Q08423 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tff1Q08423 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tff1Q08423 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Tff1Q08423 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Tff1Q08423 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Tff1Q08423 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tff1Q08423 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
Tff1Q08423 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tff1Q08423 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tff1Q08423 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tff1Q08423 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tff1Q08423 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tff1Q08423 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tff1Q08423 Amer2-203ENSMUST00000225247 2662 ntBASIC20.57■□□□□ 0.88
Tff1Q08423 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tff1Q08423 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Tff1Q08423 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tff1Q08423 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tff1Q08423 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Tff1Q08423 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Tff1Q08423 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Tff1Q08423 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Tff1Q08423 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.54■□□□□ 0.88
Tff1Q08423 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Tff1Q08423 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Tff1Q08423 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Tff1Q08423 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Tff1Q08423 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Tff1Q08423 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Tff1Q08423 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Tff1Q08423 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Tff1Q08423 Gm16148-201ENSMUST00000119653 893 ntBASIC20.5■□□□□ 0.87
Tff1Q08423 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Tff1Q08423 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Tff1Q08423 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Tff1Q08423 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
Tff1Q08423 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.48■□□□□ 0.87
Tff1Q08423 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Tff1Q08423 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Tff1Q08423 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Tff1Q08423 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Tff1Q08423 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
Tff1Q08423 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Tff1Q08423 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Tff1Q08423 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Tff1Q08423 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.45■□□□□ 0.86
Tff1Q08423 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
Tff1Q08423 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC20.44■□□□□ 0.86
Tff1Q08423 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.44■□□□□ 0.86
Tff1Q08423 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Tff1Q08423 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Tff1Q08423 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Tff1Q08423 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Tff1Q08423 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Tff1Q08423 Tdp2-203ENSMUST00000223804 1136 ntBASIC20.41■□□□□ 0.86
Tff1Q08423 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Tff1Q08423 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.4■□□□□ 0.86
Tff1Q08423 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Tff1Q08423 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Tff1Q08423 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.38■□□□□ 0.85
Tff1Q08423 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Tff1Q08423 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Tff1Q08423 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Tff1Q08423 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Tff1Q08423 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Tff1Q08423 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Tff1Q08423 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Tff1Q08423 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Tff1Q08423 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.36■□□□□ 0.85
Tff1Q08423 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Tff1Q08423 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Tff1Q08423 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Tff1Q08423 Peli2-204ENSMUST00000226513 1320 ntBASIC20.35■□□□□ 0.85
Tff1Q08423 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC20.34■□□□□ 0.85
Tff1Q08423 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC20.34■□□□□ 0.85
Tff1Q08423 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Tff1Q08423 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Tff1Q08423 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Tff1Q08423 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Tff1Q08423 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 11.8 ms