Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
Cxcl12P40224 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Cxcl12P40224 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Cxcl12P40224 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Cxcl12P40224 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
Cxcl12P40224 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC27.15■■□□□ 1.94
Cxcl12P40224 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
Cxcl12P40224 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
Cxcl12P40224 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
Cxcl12P40224 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC27.11■■□□□ 1.93
Cxcl12P40224 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Cxcl12P40224 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
Cxcl12P40224 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC27.07■■□□□ 1.92
Cxcl12P40224 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Cxcl12P40224 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Cxcl12P40224 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Cxcl12P40224 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Cxcl12P40224 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Cxcl12P40224 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC27.05■■□□□ 1.92
Cxcl12P40224 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Cxcl12P40224 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Cxcl12P40224 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Cxcl12P40224 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Cxcl12P40224 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
Cxcl12P40224 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.97■■□□□ 1.91
Cxcl12P40224 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.97■■□□□ 1.91
Cxcl12P40224 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.97■■□□□ 1.91
Cxcl12P40224 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
Cxcl12P40224 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Cxcl12P40224 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.93■■□□□ 1.9
Cxcl12P40224 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Cxcl12P40224 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.93■■□□□ 1.9
Cxcl12P40224 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.92■■□□□ 1.9
Cxcl12P40224 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.91■■□□□ 1.9
Cxcl12P40224 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Cxcl12P40224 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Cxcl12P40224 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Cxcl12P40224 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
Cxcl12P40224 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Cxcl12P40224 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.88■■□□□ 1.89
Cxcl12P40224 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Cxcl12P40224 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Cxcl12P40224 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Cxcl12P40224 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Cxcl12P40224 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Cxcl12P40224 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Cxcl12P40224 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.84■■□□□ 1.89
Cxcl12P40224 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Cxcl12P40224 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.83■■□□□ 1.89
Cxcl12P40224 Gm7432-201ENSMUST00000210343 879 ntBASIC26.83■■□□□ 1.89
Cxcl12P40224 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.83■■□□□ 1.88
Cxcl12P40224 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
Cxcl12P40224 Nkain2-201ENSMUST00000092602 558 ntBASIC26.81■■□□□ 1.88
Cxcl12P40224 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Cxcl12P40224 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.8■■□□□ 1.88
Cxcl12P40224 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Cxcl12P40224 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Cxcl12P40224 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.78■■□□□ 1.88
Cxcl12P40224 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Cxcl12P40224 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Cxcl12P40224 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Cxcl12P40224 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Cxcl12P40224 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
Cxcl12P40224 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
Cxcl12P40224 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.72■■□□□ 1.87
Cxcl12P40224 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
Cxcl12P40224 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Cxcl12P40224 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Cxcl12P40224 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.7■■□□□ 1.86
Cxcl12P40224 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.7■■□□□ 1.86
Cxcl12P40224 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Cxcl12P40224 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.68■■□□□ 1.86
Cxcl12P40224 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Cxcl12P40224 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Cxcl12P40224 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Cxcl12P40224 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.65■■□□□ 1.86
Cxcl12P40224 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Cxcl12P40224 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
Cxcl12P40224 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Cxcl12P40224 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Cxcl12P40224 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Cxcl12P40224 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
Cxcl12P40224 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Cxcl12P40224 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Cxcl12P40224 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Cxcl12P40224 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Cxcl12P40224 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC26.61■■□□□ 1.85
Cxcl12P40224 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Cxcl12P40224 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Cxcl12P40224 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Cxcl12P40224 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Cxcl12P40224 Gm11599-201ENSMUST00000118720 878 ntBASIC26.58■■□□□ 1.85
Cxcl12P40224 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.58■■□□□ 1.85
Cxcl12P40224 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
Cxcl12P40224 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Cxcl12P40224 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Cxcl12P40224 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Cxcl12P40224 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Cxcl12P40224 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Cxcl12P40224 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms