Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
SIX2Q9NPC8 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
SIX2Q9NPC8 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
SIX2Q9NPC8 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.39■■□□□ 1.33
SIX2Q9NPC8 DUX4L19-201ENST00000557448 1267 ntBASIC23.39■■□□□ 1.33
SIX2Q9NPC8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.39■■□□□ 1.33
SIX2Q9NPC8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
SIX2Q9NPC8 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
SIX2Q9NPC8 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
SIX2Q9NPC8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 AL136116.3-201ENST00000402907 1138 ntBASIC23.38■■□□□ 1.33
SIX2Q9NPC8 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 AC068587.7-201ENST00000641602 218 ntBASIC23.38■■□□□ 1.33
SIX2Q9NPC8 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SIX2Q9NPC8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 SLC47A1P1-202ENST00000449666 945 ntBASIC23.37■■□□□ 1.33
SIX2Q9NPC8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SIX2Q9NPC8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SIX2Q9NPC8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SIX2Q9NPC8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SIX2Q9NPC8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.34■■□□□ 1.33
SIX2Q9NPC8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SIX2Q9NPC8 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.34■■□□□ 1.33
SIX2Q9NPC8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.34■■□□□ 1.33
SIX2Q9NPC8 AC010141.3-201ENST00000456659 717 ntBASIC23.34■■□□□ 1.33
SIX2Q9NPC8 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
SIX2Q9NPC8 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 AC026471.6-201ENST00000622954 1905 ntBASIC23.33■■□□□ 1.33
SIX2Q9NPC8 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 AC131212.1-201ENST00000613771 668 ntBASIC23.33■■□□□ 1.33
SIX2Q9NPC8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
SIX2Q9NPC8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.33■■□□□ 1.32
SIX2Q9NPC8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
SIX2Q9NPC8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.32■■□□□ 1.32
SIX2Q9NPC8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.31■■□□□ 1.32
SIX2Q9NPC8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SIX2Q9NPC8 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.31■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms