Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 AC087742.1-201ENST00000575880 1738 ntBASIC22.75■■□□□ 1.23
RNF139Q8WU17 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 AC012414.1-201ENST00000556676 535 ntBASIC22.75■■□□□ 1.23
RNF139Q8WU17 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF139Q8WU17 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RNF139Q8WU17 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF139Q8WU17 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RNF139Q8WU17 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF139Q8WU17 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
RNF139Q8WU17 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF139Q8WU17 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF139Q8WU17 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF139Q8WU17 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC22.74■■□□□ 1.23
RNF139Q8WU17 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF139Q8WU17 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF139Q8WU17 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF139Q8WU17 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.74■■□□□ 1.23
RNF139Q8WU17 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF139Q8WU17 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF139Q8WU17 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF139Q8WU17 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.73■■□□□ 1.23
RNF139Q8WU17 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.73■■□□□ 1.23
RNF139Q8WU17 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.73■■□□□ 1.23
RNF139Q8WU17 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.73■■□□□ 1.23
RNF139Q8WU17 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.73■■□□□ 1.23
RNF139Q8WU17 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
RNF139Q8WU17 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF139Q8WU17 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF139Q8WU17 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF139Q8WU17 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF139Q8WU17 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.72■■□□□ 1.23
RNF139Q8WU17 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RNF139Q8WU17 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.72■■□□□ 1.23
RNF139Q8WU17 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
RNF139Q8WU17 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
RNF139Q8WU17 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RNF139Q8WU17 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
RNF139Q8WU17 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.71■■□□□ 1.23
RNF139Q8WU17 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
RNF139Q8WU17 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 MIR6084-201ENST00000622012 110 ntBASIC22.71■■□□□ 1.23
RNF139Q8WU17 MPST-204ENST00000404393 1329 ntTSL 5 BASIC22.71■■□□□ 1.23
RNF139Q8WU17 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.71■■□□□ 1.23
RNF139Q8WU17 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
RNF139Q8WU17 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RNF139Q8WU17 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.23
RNF139Q8WU17 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.7■■□□□ 1.23
RNF139Q8WU17 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
RNF139Q8WU17 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
RNF139Q8WU17 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.7■■□□□ 1.22
RNF139Q8WU17 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.7■■□□□ 1.22
RNF139Q8WU17 RARRES2P6-201ENST00000567333 442 ntBASIC22.7■■□□□ 1.22
RNF139Q8WU17 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.7■■□□□ 1.22
RNF139Q8WU17 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
RNF139Q8WU17 AC127496.7-201ENST00000625110 1798 ntBASIC22.7■■□□□ 1.22
RNF139Q8WU17 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF139Q8WU17 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF139Q8WU17 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF139Q8WU17 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF139Q8WU17 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF139Q8WU17 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 AC079089.2-201ENST00000531211 1277 ntBASIC22.69■■□□□ 1.22
RNF139Q8WU17 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.69■■□□□ 1.22
RNF139Q8WU17 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF139Q8WU17 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF139Q8WU17 GUSBP5-202ENST00000510805 1989 ntBASIC22.69■■□□□ 1.22
RNF139Q8WU17 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RNF139Q8WU17 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.68■■□□□ 1.22
RNF139Q8WU17 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RNF139Q8WU17 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RNF139Q8WU17 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RNF139Q8WU17 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.68■■□□□ 1.22
RNF139Q8WU17 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms