Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 H19-210ENST00000439725 1929 ntTSL 2 BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 AC007322.4-201ENST00000509611 723 ntBASIC15.26■□□□□ 0.03
CSMD3Q7Z407 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CSMD3Q7Z407 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 AL353803.4-201ENST00000565882 1934 ntBASIC15.24■□□□□ 0.03
CSMD3Q7Z407 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 AC004812.2-201ENST00000611079 2094 ntBASIC15.24■□□□□ 0.03
CSMD3Q7Z407 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC15.24■□□□□ 0.03
CSMD3Q7Z407 MYCNOS-205ENST00000641950 531 ntBASIC15.24■□□□□ 0.03
CSMD3Q7Z407 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 BRI3-207ENST00000539286 699 ntTSL 2 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 AC005224.4-201ENST00000583262 1652 ntBASIC15.23■□□□□ 0.03
CSMD3Q7Z407 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CSMD3Q7Z407 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 PARP1-202ENST00000366792 553 ntTSL 3 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 AC133041.1-202ENST00000642053 222 ntBASIC15.22■□□□□ 0.03
CSMD3Q7Z407 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 MED17-227ENST00000640521 2047 ntTSL 5 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 RARRES2P4-201ENST00000514074 484 ntBASIC15.22■□□□□ 0.03
CSMD3Q7Z407 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 MKRN4P-201ENST00000444706 1521 ntBASIC15.22■□□□□ 0.03
CSMD3Q7Z407 LINC00543-201ENST00000567234 1845 ntBASIC15.22■□□□□ 0.03
CSMD3Q7Z407 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC15.22■□□□□ 0.03
CSMD3Q7Z407 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC15.21■□□□□ 0.03
CSMD3Q7Z407 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms