Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 DUX4L4-201ENST00000566884 1269 ntBASIC16.49■□□□□ 0.23
HIST1H1AQ02539 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 AC139530.1-201ENST00000575312 1977 ntBASIC16.49■□□□□ 0.23
HIST1H1AQ02539 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HIST1H1AQ02539 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.48■□□□□ 0.23
HIST1H1AQ02539 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HIST1H1AQ02539 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 CREM-229ENST00000474362 1030 ntTSL 2 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 UNC93B8-201ENST00000511903 705 ntBASIC16.47■□□□□ 0.23
HIST1H1AQ02539 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.47■□□□□ 0.23
HIST1H1AQ02539 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 KRT16P3-201ENST00000439127 1283 ntBASIC16.46■□□□□ 0.23
HIST1H1AQ02539 AK3-203ENST00000447596 705 ntTSL 2 BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 MIR6724-1-201ENST00000616420 92 ntBASIC16.46■□□□□ 0.23
HIST1H1AQ02539 MIR6724-2-201ENST00000616483 92 ntBASIC16.46■□□□□ 0.23
HIST1H1AQ02539 MIR6724-4-201ENST00000617390 92 ntBASIC16.46■□□□□ 0.23
HIST1H1AQ02539 MIR6724-3-201ENST00000622482 92 ntBASIC16.46■□□□□ 0.23
HIST1H1AQ02539 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HIST1H1AQ02539 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
HIST1H1AQ02539 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
HIST1H1AQ02539 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HIST1H1AQ02539 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms