Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AL117328.2-201ENST00000624617 1940 ntBASIC19.41■□□□□ 0.7
H3F3AP84243 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
H3F3AP84243 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
H3F3AP84243 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.41■□□□□ 0.7
H3F3AP84243 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.41■□□□□ 0.7
H3F3AP84243 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
H3F3AP84243 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
H3F3AP84243 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.41■□□□□ 0.7
H3F3AP84243 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
H3F3AP84243 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
H3F3AP84243 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
H3F3AP84243 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
H3F3AP84243 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.4■□□□□ 0.7
H3F3AP84243 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.4■□□□□ 0.7
H3F3AP84243 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
H3F3AP84243 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
H3F3AP84243 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
H3F3AP84243 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
H3F3AP84243 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
H3F3AP84243 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.39■□□□□ 0.69
H3F3AP84243 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.39■□□□□ 0.69
H3F3AP84243 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.39■□□□□ 0.69
H3F3AP84243 ECEL1P1-201ENST00000373592 1742 ntBASIC19.39■□□□□ 0.69
H3F3AP84243 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.39■□□□□ 0.69
H3F3AP84243 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
H3F3AP84243 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
H3F3AP84243 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
H3F3AP84243 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
H3F3AP84243 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
H3F3AP84243 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
H3F3AP84243 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.38■□□□□ 0.69
H3F3AP84243 MIR572-201ENST00000384983 95 ntBASIC19.38■□□□□ 0.69
H3F3AP84243 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.38■□□□□ 0.69
H3F3AP84243 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.38■□□□□ 0.69
H3F3AP84243 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
H3F3AP84243 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.38■□□□□ 0.69
H3F3AP84243 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.38■□□□□ 0.69
H3F3AP84243 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
H3F3AP84243 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.37■□□□□ 0.69
H3F3AP84243 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.37■□□□□ 0.69
H3F3AP84243 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.37■□□□□ 0.69
H3F3AP84243 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
H3F3AP84243 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.37■□□□□ 0.69
H3F3AP84243 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.37■□□□□ 0.69
H3F3AP84243 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.37■□□□□ 0.69
H3F3AP84243 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.37■□□□□ 0.69
H3F3AP84243 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.37■□□□□ 0.69
H3F3AP84243 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
H3F3AP84243 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
H3F3AP84243 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
H3F3AP84243 AC105265.2-201ENST00000467189 838 ntBASIC19.36■□□□□ 0.69
H3F3AP84243 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
H3F3AP84243 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
H3F3AP84243 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
H3F3AP84243 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.35■□□□□ 0.69
H3F3AP84243 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.35■□□□□ 0.69
H3F3AP84243 OR7E47P-201ENST00000546390 1422 ntBASIC19.35■□□□□ 0.69
H3F3AP84243 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.35■□□□□ 0.69
H3F3AP84243 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.35■□□□□ 0.69
H3F3AP84243 SMUG1P1-201ENST00000590640 811 ntBASIC19.35■□□□□ 0.69
H3F3AP84243 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.35■□□□□ 0.69
H3F3AP84243 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.35■□□□□ 0.69
H3F3AP84243 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.35■□□□□ 0.69
H3F3AP84243 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
H3F3AP84243 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
H3F3AP84243 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
H3F3AP84243 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
H3F3AP84243 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.34■□□□□ 0.69
H3F3AP84243 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.34■□□□□ 0.69
H3F3AP84243 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
H3F3AP84243 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
H3F3AP84243 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
H3F3AP84243 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.34■□□□□ 0.69
H3F3AP84243 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms