Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.21■□□□□ 0.99
SHMT2P34897 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.21■□□□□ 0.99
SHMT2P34897 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHMT2P34897 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SHMT2P34897 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SHMT2P34897 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SHMT2P34897 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SHMT2P34897 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 LINC01960-201ENST00000563759 1884 ntBASIC21.2■□□□□ 0.98
SHMT2P34897 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.2■□□□□ 0.98
SHMT2P34897 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
SHMT2P34897 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SHMT2P34897 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.19■□□□□ 0.98
SHMT2P34897 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SHMT2P34897 IRS3P-201ENST00000223076 1006 ntBASIC21.19■□□□□ 0.98
SHMT2P34897 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHMT2P34897 AC010141.3-201ENST00000456659 717 ntBASIC21.19■□□□□ 0.98
SHMT2P34897 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.19■□□□□ 0.98
SHMT2P34897 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.19■□□□□ 0.98
SHMT2P34897 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHMT2P34897 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
SHMT2P34897 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHMT2P34897 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SHMT2P34897 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SHMT2P34897 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.18■□□□□ 0.98
SHMT2P34897 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SHMT2P34897 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.18■□□□□ 0.98
SHMT2P34897 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.18■□□□□ 0.98
SHMT2P34897 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SHMT2P34897 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.18■□□□□ 0.98
SHMT2P34897 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
SHMT2P34897 GUSBP5-202ENST00000510805 1989 ntBASIC21.17■□□□□ 0.98
SHMT2P34897 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.17■□□□□ 0.98
SHMT2P34897 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.17■□□□□ 0.98
SHMT2P34897 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.17■□□□□ 0.98
SHMT2P34897 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.17■□□□□ 0.98
SHMT2P34897 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.17■□□□□ 0.98
SHMT2P34897 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.17■□□□□ 0.98
SHMT2P34897 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 AL024507.2-201ENST00000606070 2574 ntBASIC21.17■□□□□ 0.98
SHMT2P34897 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SHMT2P34897 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.16■□□□□ 0.98
SHMT2P34897 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 AC007375.3-201ENST00000600936 2314 ntBASIC21.16■□□□□ 0.98
SHMT2P34897 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SHMT2P34897 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.16■□□□□ 0.98
SHMT2P34897 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.16■□□□□ 0.98
SHMT2P34897 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 MIR572-201ENST00000384983 95 ntBASIC21.16■□□□□ 0.98
SHMT2P34897 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.16■□□□□ 0.98
SHMT2P34897 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
SHMT2P34897 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SHMT2P34897 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SHMT2P34897 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.16■□□□□ 0.98
SHMT2P34897 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SHMT2P34897 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHMT2P34897 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.15■□□□□ 0.98
SHMT2P34897 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.15■□□□□ 0.98
SHMT2P34897 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHMT2P34897 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.15■□□□□ 0.98
SHMT2P34897 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.15■□□□□ 0.98
SHMT2P34897 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHMT2P34897 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHMT2P34897 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SHMT2P34897 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SHMT2P34897 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.14■□□□□ 0.98
SHMT2P34897 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
SHMT2P34897 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.14■□□□□ 0.97
SHMT2P34897 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHMT2P34897 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.14■□□□□ 0.97
SHMT2P34897 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms