Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC41.69■■■■■ 4.27
SHROOM4Q9ULL8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC41.69■■■■■ 4.26
SHROOM4Q9ULL8 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC41.69■■■■■ 4.26
SHROOM4Q9ULL8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC41.69■■■■■ 4.26
SHROOM4Q9ULL8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 AC008687.6-201ENST00000596318 630 ntBASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC41.68■■■■■ 4.26
SHROOM4Q9ULL8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC41.67■■■■■ 4.26
SHROOM4Q9ULL8 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 AL138781.1-201ENST00000566567 1274 ntBASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 AC231657.2-201ENST00000624556 255 ntBASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC41.66■■■■■ 4.26
SHROOM4Q9ULL8 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC41.65■■■■■ 4.26
SHROOM4Q9ULL8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC41.65■■■■■ 4.26
SHROOM4Q9ULL8 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC41.65■■■■■ 4.26
SHROOM4Q9ULL8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC41.64■■■■■ 4.26
SHROOM4Q9ULL8 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC41.64■■■■■ 4.26
SHROOM4Q9ULL8 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC41.64■■■■■ 4.26
SHROOM4Q9ULL8 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC41.64■■■■■ 4.26
SHROOM4Q9ULL8 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC41.64■■■■■ 4.26
SHROOM4Q9ULL8 ITM2C-210ENST00000620962 501 ntBASIC41.63■■■■■ 4.25
SHROOM4Q9ULL8 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC41.63■■■■■ 4.25
SHROOM4Q9ULL8 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC41.63■■■■■ 4.25
SHROOM4Q9ULL8 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC41.62■■■■■ 4.25
SHROOM4Q9ULL8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC41.62■■■■■ 4.25
SHROOM4Q9ULL8 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC41.62■■■■■ 4.25
SHROOM4Q9ULL8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC41.62■■■■■ 4.25
SHROOM4Q9ULL8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC41.62■■■■■ 4.25
SHROOM4Q9ULL8 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 BX005040.4-201ENST00000637145 1518 ntBASIC41.61■■■■■ 4.25
SHROOM4Q9ULL8 MAZ-216ENST00000616501 991 ntTSL 5 BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 FAM201B-201ENST00000458407 597 ntBASIC41.6■■■■■ 4.25
SHROOM4Q9ULL8 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC41.59■■■■■ 4.25
SHROOM4Q9ULL8 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC41.59■■■■■ 4.25
SHROOM4Q9ULL8 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC41.59■■■■■ 4.25
SHROOM4Q9ULL8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC41.59■■■■■ 4.25
SHROOM4Q9ULL8 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC41.59■■■■■ 4.25
SHROOM4Q9ULL8 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 AC083906.2-201ENST00000511578 360 ntBASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC41.58■■■■■ 4.25
SHROOM4Q9ULL8 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 RARA-203ENST00000394086 2008 ntTSL 2 BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC41.57■■■■■ 4.25
SHROOM4Q9ULL8 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC41.57■■■■■ 4.24
SHROOM4Q9ULL8 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC41.57■■■■■ 4.24
SHROOM4Q9ULL8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC41.56■■■■■ 4.24
SHROOM4Q9ULL8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC41.56■■■■■ 4.24
SHROOM4Q9ULL8 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC41.56■■■■■ 4.24
SHROOM4Q9ULL8 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC41.56■■■■■ 4.24
SHROOM4Q9ULL8 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC41.56■■■■■ 4.24
SHROOM4Q9ULL8 ARL16-209ENST00000573715 763 ntTSL 3 BASIC41.55■■■■■ 4.24
SHROOM4Q9ULL8 ARL16-211ENST00000576135 694 ntTSL 3 BASIC41.55■■■■■ 4.24
SHROOM4Q9ULL8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC41.55■■■■■ 4.24
SHROOM4Q9ULL8 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC41.53■■■■■ 4.24
SHROOM4Q9ULL8 DUX4L16-201ENST00000555130 1264 ntBASIC41.53■■■■■ 4.24
SHROOM4Q9ULL8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC41.53■■■■■ 4.24
SHROOM4Q9ULL8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC41.53■■■■■ 4.24
SHROOM4Q9ULL8 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC41.53■■■■■ 4.24
SHROOM4Q9ULL8 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC41.53■■■■■ 4.24
SHROOM4Q9ULL8 SLC29A4P1-201ENST00000398760 971 ntBASIC41.53■■■■■ 4.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms