Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
RNF39Q9H2S5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC23.83■■□□□ 1.4
RNF39Q9H2S5 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
RNF39Q9H2S5 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 AC093323.1-202ENST00000635031 2045 ntBASIC23.81■■□□□ 1.4
RNF39Q9H2S5 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
RNF39Q9H2S5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.8■■□□□ 1.4
RNF39Q9H2S5 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.8■■□□□ 1.4
RNF39Q9H2S5 TERF1P2-201ENST00000583350 1212 ntBASIC23.8■■□□□ 1.4
RNF39Q9H2S5 IKBKGP1-201ENST00000612193 1073 ntBASIC23.8■■□□□ 1.4
RNF39Q9H2S5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RNF39Q9H2S5 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RNF39Q9H2S5 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RNF39Q9H2S5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 KRT18P14-201ENST00000534205 1250 ntBASIC23.79■■□□□ 1.4
RNF39Q9H2S5 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 AC022517.1-201ENST00000592429 346 ntBASIC23.79■■□□□ 1.4
RNF39Q9H2S5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RNF39Q9H2S5 LINC02228-203ENST00000641970 1355 ntBASIC23.78■■□□□ 1.4
RNF39Q9H2S5 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 DUSP8P3-201ENST00000399571 1760 ntBASIC23.78■■□□□ 1.4
RNF39Q9H2S5 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 AC010141.3-201ENST00000456659 717 ntBASIC23.78■■□□□ 1.4
RNF39Q9H2S5 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 AC068587.7-201ENST00000641602 218 ntBASIC23.78■■□□□ 1.4
RNF39Q9H2S5 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RNF39Q9H2S5 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.77■■□□□ 1.4
RNF39Q9H2S5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 AC022494.1-201ENST00000466044 728 ntBASIC23.76■■□□□ 1.39
RNF39Q9H2S5 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.76■■□□□ 1.39
RNF39Q9H2S5 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms