Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC29.5■■■□□ 2.31
ABCA3Q99758 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
ABCA3Q99758 AC010141.2-201ENST00000452426 721 ntBASIC29.49■■■□□ 2.31
ABCA3Q99758 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC29.49■■■□□ 2.31
ABCA3Q99758 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
ABCA3Q99758 AC022211.4-201ENST00000625094 2161 ntBASIC29.49■■■□□ 2.31
ABCA3Q99758 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
ABCA3Q99758 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
ABCA3Q99758 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
ABCA3Q99758 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC29.48■■■□□ 2.31
ABCA3Q99758 PHB2-213ENST00000546111 858 ntTSL 2 BASIC29.48■■■□□ 2.31
ABCA3Q99758 AC083880.1-201ENST00000608266 535 ntBASIC29.48■■■□□ 2.31
ABCA3Q99758 AC010536.3-201ENST00000620306 533 ntBASIC29.48■■■□□ 2.31
ABCA3Q99758 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
ABCA3Q99758 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
ABCA3Q99758 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
ABCA3Q99758 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC29.47■■■□□ 2.31
ABCA3Q99758 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC29.47■■■□□ 2.31
ABCA3Q99758 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
ABCA3Q99758 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
ABCA3Q99758 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
ABCA3Q99758 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
ABCA3Q99758 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
ABCA3Q99758 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
ABCA3Q99758 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC29.46■■■□□ 2.31
ABCA3Q99758 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC29.46■■■□□ 2.31
ABCA3Q99758 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC29.46■■■□□ 2.31
ABCA3Q99758 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
ABCA3Q99758 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
ABCA3Q99758 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC29.46■■■□□ 2.31
ABCA3Q99758 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC29.45■■■□□ 2.31
ABCA3Q99758 AC105036.2-201ENST00000569468 176 ntBASIC29.45■■■□□ 2.31
ABCA3Q99758 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
ABCA3Q99758 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
ABCA3Q99758 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC29.45■■■□□ 2.3
ABCA3Q99758 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.3
ABCA3Q99758 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC29.45■■■□□ 2.3
ABCA3Q99758 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
ABCA3Q99758 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
ABCA3Q99758 PXK-203ENST00000383715 1756 ntTSL 5 BASIC29.45■■■□□ 2.3
ABCA3Q99758 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
ABCA3Q99758 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
ABCA3Q99758 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
ABCA3Q99758 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC29.44■■■□□ 2.3
ABCA3Q99758 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC29.44■■■□□ 2.3
ABCA3Q99758 AC013268.1-206ENST00000638368 961 ntBASIC29.44■■■□□ 2.3
ABCA3Q99758 AC112229.1-201ENST00000639295 961 ntBASIC29.44■■■□□ 2.3
ABCA3Q99758 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
ABCA3Q99758 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC29.44■■■□□ 2.3
ABCA3Q99758 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC29.43■■■□□ 2.3
ABCA3Q99758 SERP1-208ENST00000491660 830 ntTSL 2 BASIC29.43■■■□□ 2.3
ABCA3Q99758 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC29.43■■■□□ 2.3
ABCA3Q99758 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
ABCA3Q99758 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.43■■■□□ 2.3
ABCA3Q99758 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
ABCA3Q99758 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
ABCA3Q99758 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC29.42■■■□□ 2.3
ABCA3Q99758 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
ABCA3Q99758 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
ABCA3Q99758 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
ABCA3Q99758 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
ABCA3Q99758 AC009237.3-201ENST00000393279 1427 ntBASIC29.42■■■□□ 2.3
ABCA3Q99758 OXCT2P1-201ENST00000447263 1535 ntBASIC29.42■■■□□ 2.3
ABCA3Q99758 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
ABCA3Q99758 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC29.41■■■□□ 2.3
ABCA3Q99758 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC29.41■■■□□ 2.3
ABCA3Q99758 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC29.41■■■□□ 2.3
ABCA3Q99758 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC29.41■■■□□ 2.3
ABCA3Q99758 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
ABCA3Q99758 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC29.41■■■□□ 2.3
ABCA3Q99758 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
ABCA3Q99758 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC29.4■■■□□ 2.3
ABCA3Q99758 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
ABCA3Q99758 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC29.4■■■□□ 2.3
ABCA3Q99758 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC29.4■■■□□ 2.3
ABCA3Q99758 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
ABCA3Q99758 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC29.4■■■□□ 2.3
ABCA3Q99758 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
ABCA3Q99758 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC29.39■■■□□ 2.3
ABCA3Q99758 AP001160.3-201ENST00000601484 763 ntBASIC29.39■■■□□ 2.3
ABCA3Q99758 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
ABCA3Q99758 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC29.38■■■□□ 2.29
ABCA3Q99758 AC007322.4-201ENST00000509611 723 ntBASIC29.38■■■□□ 2.29
ABCA3Q99758 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC29.38■■■□□ 2.29
ABCA3Q99758 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC29.38■■■□□ 2.29
ABCA3Q99758 AC138907.5-202ENST00000569484 235 ntBASIC29.38■■■□□ 2.29
ABCA3Q99758 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
ABCA3Q99758 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.38■■■□□ 2.29
ABCA3Q99758 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
ABCA3Q99758 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
ABCA3Q99758 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
ABCA3Q99758 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
ABCA3Q99758 PPP1R14BP2-201ENST00000426284 444 ntBASIC29.37■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms