Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
USP47Q96K76 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
USP47Q96K76 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP47Q96K76 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP47Q96K76 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC30.63■■■□□ 2.49
USP47Q96K76 LINC00526-201ENST00000581067 1875 ntBASIC30.63■■■□□ 2.49
USP47Q96K76 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC30.62■■■□□ 2.49
USP47Q96K76 TERT-206ENST00000508104 2486 ntTSL 5 BASIC30.62■■■□□ 2.49
USP47Q96K76 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
USP47Q96K76 AC080038.3-201ENST00000623346 1952 ntBASIC30.62■■■□□ 2.49
USP47Q96K76 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC30.62■■■□□ 2.49
USP47Q96K76 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP47Q96K76 JTB-203ENST00000368589 1216 ntTSL 2 BASIC30.62■■■□□ 2.49
USP47Q96K76 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP47Q96K76 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC30.62■■■□□ 2.49
USP47Q96K76 AC079089.2-201ENST00000531211 1277 ntBASIC30.62■■■□□ 2.49
USP47Q96K76 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC30.62■■■□□ 2.49
USP47Q96K76 MIR6084-201ENST00000622012 110 ntBASIC30.62■■■□□ 2.49
USP47Q96K76 AC105233.4-201ENST00000642045 216 ntBASIC30.62■■■□□ 2.49
USP47Q96K76 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP47Q96K76 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC30.61■■■□□ 2.49
USP47Q96K76 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC30.61■■■□□ 2.49
USP47Q96K76 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC30.61■■■□□ 2.49
USP47Q96K76 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC30.61■■■□□ 2.49
USP47Q96K76 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC30.61■■■□□ 2.49
USP47Q96K76 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP47Q96K76 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
USP47Q96K76 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
USP47Q96K76 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC30.6■■■□□ 2.49
USP47Q96K76 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
USP47Q96K76 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC30.6■■■□□ 2.49
USP47Q96K76 AC133561.1-201ENST00000568600 2415 ntBASIC30.6■■■□□ 2.49
USP47Q96K76 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
USP47Q96K76 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP47Q96K76 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.59■■■□□ 2.49
USP47Q96K76 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC30.59■■■□□ 2.49
USP47Q96K76 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC30.59■■■□□ 2.49
USP47Q96K76 AC139530.1-201ENST00000575312 1977 ntBASIC30.59■■■□□ 2.49
USP47Q96K76 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC30.58■■■□□ 2.49
USP47Q96K76 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
USP47Q96K76 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP47Q96K76 AL354811.1-201ENST00000610286 706 ntBASIC30.58■■■□□ 2.49
USP47Q96K76 AL358852.1-201ENST00000623174 1268 ntBASIC30.58■■■□□ 2.49
USP47Q96K76 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP47Q96K76 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
USP47Q96K76 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP47Q96K76 AC027612.3-201ENST00000413684 1047 ntBASIC30.57■■■□□ 2.48
USP47Q96K76 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC30.57■■■□□ 2.48
USP47Q96K76 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC30.56■■■□□ 2.48
USP47Q96K76 LTK-203ENST00000453182 2412 ntTSL 2 BASIC30.56■■■□□ 2.48
USP47Q96K76 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP47Q96K76 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC30.56■■■□□ 2.48
USP47Q96K76 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP47Q96K76 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
USP47Q96K76 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC30.55■■■□□ 2.48
USP47Q96K76 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC30.55■■■□□ 2.48
USP47Q96K76 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP47Q96K76 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP47Q96K76 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
USP47Q96K76 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USP47Q96K76 NME4-202ENST00000382940 766 ntTSL 3 BASIC30.55■■■□□ 2.48
USP47Q96K76 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP47Q96K76 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC30.55■■■□□ 2.48
USP47Q96K76 NME4-211ENST00000620944 1193 ntTSL 2 BASIC30.55■■■□□ 2.48
USP47Q96K76 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USP47Q96K76 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC30.55■■■□□ 2.48
USP47Q96K76 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC30.55■■■□□ 2.48
USP47Q96K76 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP47Q96K76 MFF-208ENST00000409616 1247 ntTSL 5 BASIC30.54■■■□□ 2.48
USP47Q96K76 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC30.54■■■□□ 2.48
USP47Q96K76 AC104564.3-201ENST00000582367 638 ntBASIC30.54■■■□□ 2.48
USP47Q96K76 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC30.54■■■□□ 2.48
USP47Q96K76 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP47Q96K76 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP47Q96K76 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
USP47Q96K76 AC233723.2-201ENST00000623798 2106 ntBASIC30.54■■■□□ 2.48
USP47Q96K76 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP47Q96K76 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC30.54■■■□□ 2.48
USP47Q96K76 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
USP47Q96K76 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC30.54■■■□□ 2.48
USP47Q96K76 MIR5787-201ENST00000611784 55 ntBASIC30.54■■■□□ 2.48
USP47Q96K76 SP2-202ENST00000613139 908 ntTSL 5 BASIC30.54■■■□□ 2.48
USP47Q96K76 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 AC012676.1-201ENST00000574705 1949 ntBASIC30.53■■■□□ 2.48
USP47Q96K76 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC30.53■■■□□ 2.48
USP47Q96K76 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP47Q96K76 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
USP47Q96K76 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms