Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
RTF1Q92541 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
RTF1Q92541 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
RTF1Q92541 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC28.48■■■□□ 2.15
RTF1Q92541 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC28.47■■■□□ 2.15
RTF1Q92541 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.47■■■□□ 2.15
RTF1Q92541 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC28.47■■■□□ 2.15
RTF1Q92541 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.47■■■□□ 2.15
RTF1Q92541 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC28.47■■■□□ 2.15
RTF1Q92541 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
RTF1Q92541 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
RTF1Q92541 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC28.47■■■□□ 2.15
RTF1Q92541 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
RTF1Q92541 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC28.46■■■□□ 2.15
RTF1Q92541 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
RTF1Q92541 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RTF1Q92541 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RTF1Q92541 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
RTF1Q92541 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.46■■■□□ 2.15
RTF1Q92541 ASL-203ENST00000380839 1765 ntTSL 5 BASIC28.46■■■□□ 2.15
RTF1Q92541 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC28.46■■■□□ 2.15
RTF1Q92541 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC28.46■■■□□ 2.15
RTF1Q92541 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
RTF1Q92541 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC28.45■■■□□ 2.15
RTF1Q92541 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
RTF1Q92541 NFE2L3P1-201ENST00000588207 1959 ntBASIC28.45■■■□□ 2.14
RTF1Q92541 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.45■■■□□ 2.14
RTF1Q92541 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC28.45■■■□□ 2.14
RTF1Q92541 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTF1Q92541 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
RTF1Q92541 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTF1Q92541 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
RTF1Q92541 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
RTF1Q92541 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC28.44■■■□□ 2.14
RTF1Q92541 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
RTF1Q92541 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC28.43■■■□□ 2.14
RTF1Q92541 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC28.43■■■□□ 2.14
RTF1Q92541 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC28.43■■■□□ 2.14
RTF1Q92541 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
RTF1Q92541 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
RTF1Q92541 IKBKGP1-201ENST00000612193 1073 ntBASIC28.43■■■□□ 2.14
RTF1Q92541 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC28.43■■■□□ 2.14
RTF1Q92541 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
RTF1Q92541 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
RTF1Q92541 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
RTF1Q92541 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC28.42■■■□□ 2.14
RTF1Q92541 AC079089.2-201ENST00000531211 1277 ntBASIC28.42■■■□□ 2.14
RTF1Q92541 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
RTF1Q92541 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC28.42■■■□□ 2.14
RTF1Q92541 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC28.41■■■□□ 2.14
RTF1Q92541 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
RTF1Q92541 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.41■■■□□ 2.14
RTF1Q92541 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC28.41■■■□□ 2.14
RTF1Q92541 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.41■■■□□ 2.14
RTF1Q92541 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RTF1Q92541 GCA-201ENST00000233612 1694 ntTSL 2 BASIC28.4■■■□□ 2.14
RTF1Q92541 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC28.4■■■□□ 2.14
RTF1Q92541 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
RTF1Q92541 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC28.4■■■□□ 2.14
RTF1Q92541 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
RTF1Q92541 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC28.4■■■□□ 2.14
RTF1Q92541 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
RTF1Q92541 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
RTF1Q92541 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RTF1Q92541 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
RTF1Q92541 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.39■■■□□ 2.14
RTF1Q92541 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.39■■■□□ 2.14
RTF1Q92541 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
RTF1Q92541 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
RTF1Q92541 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC28.39■■■□□ 2.13
RTF1Q92541 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
RTF1Q92541 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RTF1Q92541 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
RTF1Q92541 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC28.38■■■□□ 2.13
RTF1Q92541 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC28.38■■■□□ 2.13
RTF1Q92541 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.38■■■□□ 2.13
RTF1Q92541 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC28.38■■■□□ 2.13
RTF1Q92541 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC28.38■■■□□ 2.13
RTF1Q92541 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RTF1Q92541 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RTF1Q92541 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
RTF1Q92541 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
RTF1Q92541 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
RTF1Q92541 COX20-201ENST00000366528 568 ntTSL 2 BASIC28.37■■■□□ 2.13
RTF1Q92541 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
RTF1Q92541 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC28.37■■■□□ 2.13
RTF1Q92541 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC28.37■■■□□ 2.13
RTF1Q92541 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
RTF1Q92541 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC28.37■■■□□ 2.13
RTF1Q92541 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
RTF1Q92541 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC28.37■■■□□ 2.13
RTF1Q92541 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RTF1Q92541 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
RTF1Q92541 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms