Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
VPS52Q8N1B4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 AC004687.1-201ENST00000579003 1625 ntBASIC23.53■■□□□ 1.36
VPS52Q8N1B4 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 KRT18P61-201ENST00000585825 1298 ntBASIC23.53■■□□□ 1.36
VPS52Q8N1B4 TPRG1LP1-201ENST00000598702 760 ntBASIC23.53■■□□□ 1.36
VPS52Q8N1B4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS52Q8N1B4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS52Q8N1B4 AC079630.1-202ENST00000618127 1840 ntBASIC23.52■■□□□ 1.36
VPS52Q8N1B4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 GALNS-213ENST00000569433 723 ntTSL 3 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS52Q8N1B4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS52Q8N1B4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 AC006015.1-201ENST00000429970 570 ntBASIC23.49■■□□□ 1.35
VPS52Q8N1B4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS52Q8N1B4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 COX20-201ENST00000366528 568 ntTSL 2 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 AC016769.1-201ENST00000409132 1010 ntBASIC23.48■■□□□ 1.35
VPS52Q8N1B4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 AC137761.2-201ENST00000561729 223 ntBASIC23.48■■□□□ 1.35
VPS52Q8N1B4 AC145350.3-201ENST00000569033 163 ntBASIC23.48■■□□□ 1.35
VPS52Q8N1B4 AC080038.1-201ENST00000611274 1154 ntBASIC23.48■■□□□ 1.35
VPS52Q8N1B4 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 BX005040.4-201ENST00000637145 1518 ntBASIC23.48■■□□□ 1.35
VPS52Q8N1B4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS52Q8N1B4 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.47■■□□□ 1.35
VPS52Q8N1B4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
VPS52Q8N1B4 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
VPS52Q8N1B4 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
VPS52Q8N1B4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms