Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3DQ7Z6J8 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 AC079834.2-201ENST00000609776 1949 ntBASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 AC010141.3-201ENST00000456659 717 ntBASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 AC079089.2-201ENST00000531211 1277 ntBASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3DQ7Z6J8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 AC133561.4-201ENST00000566112 224 ntBASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 AL355001.2-201ENST00000620617 1191 ntBASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3DQ7Z6J8 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 MIR939-201ENST00000401314 82 ntBASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 AC099791.1-201ENST00000416440 715 ntBASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 SUDS3P1-201ENST00000505831 966 ntBASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 AL136967.2-201ENST00000623968 743 ntBASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.67■□□□□ 0.9
UBE3DQ7Z6J8 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 AF213884.3-201ENST00000563833 479 ntBASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 OXCT2P1-201ENST00000447263 1535 ntBASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.66■□□□□ 0.9
UBE3DQ7Z6J8 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 AC087239.1-201ENST00000622671 572 ntBASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
UBE3DQ7Z6J8 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
UBE3DQ7Z6J8 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
UBE3DQ7Z6J8 AC092053.2-201ENST00000640557 1818 ntBASIC20.64■□□□□ 0.9
UBE3DQ7Z6J8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
UBE3DQ7Z6J8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
UBE3DQ7Z6J8 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 AC027682.1-201ENST00000562846 899 ntBASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
UBE3DQ7Z6J8 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.63■□□□□ 0.89
UBE3DQ7Z6J8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 506.6 ms