Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
HMGCS2P54868 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
HMGCS2P54868 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC25.35■■□□□ 1.65
HMGCS2P54868 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
HMGCS2P54868 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
HMGCS2P54868 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC25.35■■□□□ 1.65
HMGCS2P54868 WT1-AS_3.1-201ENST00000613262 234 ntBASIC25.35■■□□□ 1.65
HMGCS2P54868 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
HMGCS2P54868 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC25.35■■□□□ 1.65
HMGCS2P54868 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
HMGCS2P54868 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
HMGCS2P54868 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC25.34■■□□□ 1.65
HMGCS2P54868 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC25.34■■□□□ 1.65
HMGCS2P54868 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 AC104187.1-201ENST00000607510 612 ntBASIC25.34■■□□□ 1.65
HMGCS2P54868 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGCS2P54868 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
HMGCS2P54868 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
HMGCS2P54868 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
HMGCS2P54868 MFSD11-216ENST00000590393 1141 ntBASIC25.33■■□□□ 1.65
HMGCS2P54868 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25.33■■□□□ 1.64
HMGCS2P54868 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
HMGCS2P54868 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.32■■□□□ 1.64
HMGCS2P54868 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.32■■□□□ 1.64
HMGCS2P54868 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
HMGCS2P54868 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
HMGCS2P54868 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC25.32■■□□□ 1.64
HMGCS2P54868 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC25.32■■□□□ 1.64
HMGCS2P54868 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
HMGCS2P54868 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC25.31■■□□□ 1.64
HMGCS2P54868 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.31■■□□□ 1.64
HMGCS2P54868 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC25.31■■□□□ 1.64
HMGCS2P54868 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGCS2P54868 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.31■■□□□ 1.64
HMGCS2P54868 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.31■■□□□ 1.64
HMGCS2P54868 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC25.31■■□□□ 1.64
HMGCS2P54868 MDK-213ENST00000617138 635 ntTSL 2 BASIC25.31■■□□□ 1.64
HMGCS2P54868 KRT87P-202ENST00000534226 1464 ntBASIC25.31■■□□□ 1.64
HMGCS2P54868 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
HMGCS2P54868 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGCS2P54868 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
HMGCS2P54868 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
HMGCS2P54868 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGCS2P54868 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
HMGCS2P54868 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
HMGCS2P54868 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC25.3■■□□□ 1.64
HMGCS2P54868 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
HMGCS2P54868 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.3■■□□□ 1.64
HMGCS2P54868 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGCS2P54868 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
HMGCS2P54868 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.3■■□□□ 1.64
HMGCS2P54868 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.29■■□□□ 1.64
HMGCS2P54868 AC009237.3-201ENST00000393279 1427 ntBASIC25.29■■□□□ 1.64
HMGCS2P54868 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC25.29■■□□□ 1.64
HMGCS2P54868 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
HMGCS2P54868 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC25.29■■□□□ 1.64
HMGCS2P54868 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC25.29■■□□□ 1.64
HMGCS2P54868 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC25.29■■□□□ 1.64
HMGCS2P54868 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
HMGCS2P54868 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
HMGCS2P54868 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGCS2P54868 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
HMGCS2P54868 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGCS2P54868 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGCS2P54868 GPX1P1-201ENST00000388829 606 ntBASIC25.28■■□□□ 1.64
HMGCS2P54868 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.28■■□□□ 1.64
HMGCS2P54868 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
HMGCS2P54868 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGCS2P54868 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
HMGCS2P54868 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
HMGCS2P54868 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
HMGCS2P54868 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC25.27■■□□□ 1.64
HMGCS2P54868 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGCS2P54868 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
HMGCS2P54868 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGCS2P54868 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGCS2P54868 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC25.26■■□□□ 1.63
HMGCS2P54868 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
HMGCS2P54868 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC25.26■■□□□ 1.63
HMGCS2P54868 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC25.26■■□□□ 1.63
HMGCS2P54868 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC25.26■■□□□ 1.63
HMGCS2P54868 MAZ-216ENST00000616501 991 ntTSL 5 BASIC25.26■■□□□ 1.63
HMGCS2P54868 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
HMGCS2P54868 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
HMGCS2P54868 AL050303.2-201ENST00000619798 666 ntBASIC25.25■■□□□ 1.63
HMGCS2P54868 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC25.25■■□□□ 1.63
HMGCS2P54868 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
HMGCS2P54868 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGCS2P54868 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
HMGCS2P54868 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC25.24■■□□□ 1.63
HMGCS2P54868 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
HMGCS2P54868 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms