Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.9■■□□□ 1.1
CXCL12P48061 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CXCL12P48061 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.9■■□□□ 1.1
CXCL12P48061 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.9■■□□□ 1.1
CXCL12P48061 AC073210.2-201ENST00000430369 194 ntBASIC21.9■■□□□ 1.1
CXCL12P48061 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.9■■□□□ 1.1
CXCL12P48061 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CXCL12P48061 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.9■■□□□ 1.1
CXCL12P48061 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
CXCL12P48061 AP001160.3-201ENST00000601484 763 ntBASIC21.9■■□□□ 1.1
CXCL12P48061 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.9■■□□□ 1.1
CXCL12P48061 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CXCL12P48061 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CXCL12P48061 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.9■■□□□ 1.1
CXCL12P48061 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
CXCL12P48061 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
CXCL12P48061 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.89■■□□□ 1.1
CXCL12P48061 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CXCL12P48061 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CXCL12P48061 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CXCL12P48061 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CXCL12P48061 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.89■■□□□ 1.09
CXCL12P48061 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.89■■□□□ 1.09
CXCL12P48061 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CXCL12P48061 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CXCL12P48061 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CXCL12P48061 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CXCL12P48061 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.88■■□□□ 1.09
CXCL12P48061 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CXCL12P48061 AC105036.2-201ENST00000569468 176 ntBASIC21.88■■□□□ 1.09
CXCL12P48061 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CXCL12P48061 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CXCL12P48061 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CXCL12P48061 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.87■■□□□ 1.09
CXCL12P48061 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
CXCL12P48061 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CXCL12P48061 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.87■■□□□ 1.09
CXCL12P48061 AC133552.2-202ENST00000575694 574 ntBASIC21.87■■□□□ 1.09
CXCL12P48061 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.87■■□□□ 1.09
CXCL12P48061 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.87■■□□□ 1.09
CXCL12P48061 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CXCL12P48061 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
CXCL12P48061 AC138932.3-201ENST00000567634 1902 ntBASIC21.86■■□□□ 1.09
CXCL12P48061 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CXCL12P48061 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CXCL12P48061 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CXCL12P48061 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.86■■□□□ 1.09
CXCL12P48061 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CXCL12P48061 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CXCL12P48061 AC093827.2-201ENST00000512654 315 ntBASIC21.86■■□□□ 1.09
CXCL12P48061 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CXCL12P48061 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CXCL12P48061 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CXCL12P48061 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CXCL12P48061 AC142381.3-201ENST00000568208 1670 ntBASIC21.85■■□□□ 1.09
CXCL12P48061 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CXCL12P48061 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.85■■□□□ 1.09
CXCL12P48061 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CXCL12P48061 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.85■■□□□ 1.09
CXCL12P48061 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
CXCL12P48061 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
CXCL12P48061 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.85■■□□□ 1.09
CXCL12P48061 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
CXCL12P48061 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CXCL12P48061 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.84■■□□□ 1.09
CXCL12P48061 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.84■■□□□ 1.09
CXCL12P48061 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.84■■□□□ 1.09
CXCL12P48061 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CXCL12P48061 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CXCL12P48061 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CXCL12P48061 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CXCL12P48061 CNN2P6-201ENST00000439038 900 ntBASIC21.83■■□□□ 1.09
CXCL12P48061 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.83■■□□□ 1.09
CXCL12P48061 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.83■■□□□ 1.09
CXCL12P48061 AC008687.6-201ENST00000596318 630 ntBASIC21.83■■□□□ 1.09
CXCL12P48061 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CXCL12P48061 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CXCL12P48061 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.83■■□□□ 1.08
CXCL12P48061 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
CXCL12P48061 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
CXCL12P48061 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CXCL12P48061 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.82■■□□□ 1.08
CXCL12P48061 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CXCL12P48061 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CXCL12P48061 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms