Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.91■□□□□ 0.78
RFC3P40938 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
RFC3P40938 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFC3P40938 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.91■□□□□ 0.78
RFC3P40938 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
RFC3P40938 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.91■□□□□ 0.78
RFC3P40938 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.9■□□□□ 0.78
RFC3P40938 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RFC3P40938 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.9■□□□□ 0.78
RFC3P40938 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.9■□□□□ 0.78
RFC3P40938 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
RFC3P40938 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RFC3P40938 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RFC3P40938 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RFC3P40938 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
RFC3P40938 AC010141.3-201ENST00000456659 717 ntBASIC19.89■□□□□ 0.77
RFC3P40938 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.89■□□□□ 0.77
RFC3P40938 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 TERF1P2-201ENST00000583350 1212 ntBASIC19.89■□□□□ 0.77
RFC3P40938 AC092068.2-201ENST00000590491 1708 ntBASIC19.89■□□□□ 0.77
RFC3P40938 AC087239.1-201ENST00000622671 572 ntBASIC19.89■□□□□ 0.77
RFC3P40938 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RFC3P40938 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
RFC3P40938 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.88■□□□□ 0.77
RFC3P40938 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.88■□□□□ 0.77
RFC3P40938 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.88■□□□□ 0.77
RFC3P40938 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RFC3P40938 NTF6G-201ENST00000591094 616 ntBASIC19.88■□□□□ 0.77
RFC3P40938 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
RFC3P40938 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.88■□□□□ 0.77
RFC3P40938 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC19.88■□□□□ 0.77
RFC3P40938 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFC3P40938 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
RFC3P40938 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
RFC3P40938 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.87■□□□□ 0.77
RFC3P40938 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RFC3P40938 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.87■□□□□ 0.77
RFC3P40938 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RFC3P40938 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
RFC3P40938 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.87■□□□□ 0.77
RFC3P40938 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.87■□□□□ 0.77
RFC3P40938 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
RFC3P40938 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RFC3P40938 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFC3P40938 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
RFC3P40938 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFC3P40938 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RFC3P40938 AC068587.7-201ENST00000641602 218 ntBASIC19.86■□□□□ 0.77
RFC3P40938 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
RFC3P40938 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.86■□□□□ 0.77
RFC3P40938 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
RFC3P40938 DUSP8P3-201ENST00000399571 1760 ntBASIC19.85■□□□□ 0.77
RFC3P40938 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.85■□□□□ 0.77
RFC3P40938 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.85■□□□□ 0.77
RFC3P40938 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
RFC3P40938 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
RFC3P40938 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.85■□□□□ 0.77
RFC3P40938 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.84■□□□□ 0.77
RFC3P40938 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.84■□□□□ 0.77
RFC3P40938 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.84■□□□□ 0.77
RFC3P40938 SMUG1P1-201ENST00000590640 811 ntBASIC19.84■□□□□ 0.77
RFC3P40938 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFC3P40938 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RFC3P40938 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.84■□□□□ 0.77
RFC3P40938 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RFC3P40938 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.83■□□□□ 0.77
RFC3P40938 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
RFC3P40938 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RFC3P40938 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RFC3P40938 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.83■□□□□ 0.77
RFC3P40938 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.83■□□□□ 0.77
RFC3P40938 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.83■□□□□ 0.77
RFC3P40938 AL137784.2-201ENST00000607332 1000 ntBASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms