Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
CPSF4O95639 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.66■□□□□ 0.9
CPSF4O95639 AL117332.1-201ENST00000622628 974 ntBASIC20.66■□□□□ 0.9
CPSF4O95639 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.66■□□□□ 0.9
CPSF4O95639 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CPSF4O95639 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4O95639 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.65■□□□□ 0.9
CPSF4O95639 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CPSF4O95639 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.65■□□□□ 0.9
CPSF4O95639 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CPSF4O95639 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CPSF4O95639 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.64■□□□□ 0.9
CPSF4O95639 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.64■□□□□ 0.9
CPSF4O95639 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CPSF4O95639 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CPSF4O95639 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4O95639 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4O95639 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.64■□□□□ 0.89
CPSF4O95639 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4O95639 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.64■□□□□ 0.89
CPSF4O95639 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4O95639 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4O95639 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CPSF4O95639 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CPSF4O95639 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CPSF4O95639 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.63■□□□□ 0.89
CPSF4O95639 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.63■□□□□ 0.89
CPSF4O95639 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.63■□□□□ 0.89
CPSF4O95639 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.63■□□□□ 0.89
CPSF4O95639 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.63■□□□□ 0.89
CPSF4O95639 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CPSF4O95639 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4O95639 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4O95639 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.62■□□□□ 0.89
CPSF4O95639 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CPSF4O95639 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4O95639 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4O95639 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4O95639 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CPSF4O95639 KRT16P3-201ENST00000439127 1283 ntBASIC20.62■□□□□ 0.89
CPSF4O95639 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CPSF4O95639 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.62■□□□□ 0.89
CPSF4O95639 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.62■□□□□ 0.89
CPSF4O95639 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.62■□□□□ 0.89
CPSF4O95639 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CPSF4O95639 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CPSF4O95639 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4O95639 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4O95639 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.61■□□□□ 0.89
CPSF4O95639 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4O95639 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
CPSF4O95639 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.61■□□□□ 0.89
CPSF4O95639 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.61■□□□□ 0.89
CPSF4O95639 AL499627.2-201ENST00000606283 725 ntBASIC20.61■□□□□ 0.89
CPSF4O95639 AL137060.1-201ENST00000618151 2648 ntBASIC20.61■□□□□ 0.89
CPSF4O95639 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4O95639 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.61■□□□□ 0.89
CPSF4O95639 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4O95639 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CPSF4O95639 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4O95639 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.6■□□□□ 0.89
CPSF4O95639 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CPSF4O95639 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.6■□□□□ 0.89
CPSF4O95639 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CPSF4O95639 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.6■□□□□ 0.89
CPSF4O95639 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.6■□□□□ 0.89
CPSF4O95639 CA15P2-201ENST00000611168 834 ntBASIC20.6■□□□□ 0.89
CPSF4O95639 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.6■□□□□ 0.89
CPSF4O95639 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CPSF4O95639 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CPSF4O95639 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
CPSF4O95639 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms