Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX3O95343 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SIX3O95343 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX3O95343 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX3O95343 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX3O95343 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SIX3O95343 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX3O95343 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SIX3O95343 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.25■□□□□ 0.99
SIX3O95343 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
SIX3O95343 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX3O95343 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX3O95343 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX3O95343 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX3O95343 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX3O95343 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX3O95343 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX3O95343 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX3O95343 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX3O95343 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX3O95343 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX3O95343 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX3O95343 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX3O95343 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX3O95343 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.23■□□□□ 0.99
SIX3O95343 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX3O95343 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.23■□□□□ 0.99
SIX3O95343 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SIX3O95343 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.23■□□□□ 0.99
SIX3O95343 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX3O95343 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SIX3O95343 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SIX3O95343 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.23■□□□□ 0.99
SIX3O95343 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX3O95343 FAM99A-202ENST00000538190 1989 ntBASIC21.23■□□□□ 0.99
SIX3O95343 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.23■□□□□ 0.99
SIX3O95343 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX3O95343 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SIX3O95343 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX3O95343 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.22■□□□□ 0.99
SIX3O95343 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SIX3O95343 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SIX3O95343 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX3O95343 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX3O95343 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SIX3O95343 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.22■□□□□ 0.99
SIX3O95343 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX3O95343 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.21■□□□□ 0.99
SIX3O95343 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX3O95343 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SIX3O95343 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX3O95343 AL512631.2-201ENST00000604634 923 ntBASIC21.21■□□□□ 0.99
SIX3O95343 AL031602.1-201ENST00000633169 911 ntBASIC21.21■□□□□ 0.99
SIX3O95343 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX3O95343 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SIX3O95343 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SIX3O95343 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
SIX3O95343 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.2■□□□□ 0.99
SIX3O95343 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SIX3O95343 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX3O95343 MIR3181-201ENST00000578512 73 ntBASIC21.2■□□□□ 0.98
SIX3O95343 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.2■□□□□ 0.98
SIX3O95343 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.2■□□□□ 0.98
SIX3O95343 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SIX3O95343 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SIX3O95343 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.19■□□□□ 0.98
SIX3O95343 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX3O95343 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SIX3O95343 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.19■□□□□ 0.98
SIX3O95343 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
SIX3O95343 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
SIX3O95343 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX3O95343 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms