Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 AC105265.2-201ENST00000467189 838 ntBASIC19.09■□□□□ 0.65
LMX1BO60663 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LMX1BO60663 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 AC009102.2-201ENST00000606772 1639 ntBASIC19.09■□□□□ 0.65
LMX1BO60663 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LMX1BO60663 FBXW4P1-201ENST00000426721 2239 ntBASIC19.09■□□□□ 0.65
LMX1BO60663 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.09■□□□□ 0.65
LMX1BO60663 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LMX1BO60663 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.08■□□□□ 0.65
LMX1BO60663 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LMX1BO60663 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
LMX1BO60663 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
LMX1BO60663 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.08■□□□□ 0.65
LMX1BO60663 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
LMX1BO60663 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
LMX1BO60663 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1BO60663 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.08■□□□□ 0.64
LMX1BO60663 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1BO60663 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.08■□□□□ 0.64
LMX1BO60663 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LMX1BO60663 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1BO60663 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.08■□□□□ 0.64
LMX1BO60663 AL137060.1-201ENST00000618151 2648 ntBASIC19.07■□□□□ 0.64
LMX1BO60663 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1BO60663 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1BO60663 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 DUX4L4-201ENST00000566884 1269 ntBASIC19.07■□□□□ 0.64
LMX1BO60663 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.07■□□□□ 0.64
LMX1BO60663 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LMX1BO60663 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 LINC01960-201ENST00000563759 1884 ntBASIC19.07■□□□□ 0.64
LMX1BO60663 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LMX1BO60663 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.06■□□□□ 0.64
LMX1BO60663 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
LMX1BO60663 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.06■□□□□ 0.64
LMX1BO60663 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.06■□□□□ 0.64
LMX1BO60663 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
LMX1BO60663 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 AC004687.1-201ENST00000579003 1625 ntBASIC19.06■□□□□ 0.64
LMX1BO60663 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1BO60663 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LMX1BO60663 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1BO60663 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1BO60663 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.05■□□□□ 0.64
LMX1BO60663 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1BO60663 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.05■□□□□ 0.64
LMX1BO60663 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.05■□□□□ 0.64
LMX1BO60663 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.05■□□□□ 0.64
LMX1BO60663 AF213884.3-201ENST00000563833 479 ntBASIC19.05■□□□□ 0.64
LMX1BO60663 AL136967.2-201ENST00000623968 743 ntBASIC19.05■□□□□ 0.64
LMX1BO60663 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.05■□□□□ 0.64
LMX1BO60663 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.05■□□□□ 0.64
LMX1BO60663 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LMX1BO60663 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
LMX1BO60663 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LMX1BO60663 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.04■□□□□ 0.64
LMX1BO60663 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LMX1BO60663 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 AC092171.4-201ENST00000609130 632 ntBASIC19.04■□□□□ 0.64
LMX1BO60663 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.04■□□□□ 0.64
LMX1BO60663 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1BO60663 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
LMX1BO60663 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.03■□□□□ 0.64
LMX1BO60663 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.03■□□□□ 0.64
LMX1BO60663 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 AC009086.3-201ENST00000623486 1008 ntBASIC19.03■□□□□ 0.64
LMX1BO60663 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1BO60663 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.03■□□□□ 0.64
LMX1BO60663 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms