Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.25■□□□□ 0.83
PRKNO60260 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.25■□□□□ 0.83
PRKNO60260 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.25■□□□□ 0.83
PRKNO60260 MIR6084-201ENST00000622012 110 ntBASIC20.25■□□□□ 0.83
PRKNO60260 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
PRKNO60260 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.25■□□□□ 0.83
PRKNO60260 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.25■□□□□ 0.83
PRKNO60260 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PRKNO60260 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.24■□□□□ 0.83
PRKNO60260 AC010141.3-201ENST00000456659 717 ntBASIC20.24■□□□□ 0.83
PRKNO60260 AC068587.7-201ENST00000641602 218 ntBASIC20.24■□□□□ 0.83
PRKNO60260 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PRKNO60260 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PRKNO60260 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.23■□□□□ 0.83
PRKNO60260 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.23■□□□□ 0.83
PRKNO60260 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.23■□□□□ 0.83
PRKNO60260 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.23■□□□□ 0.83
PRKNO60260 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.23■□□□□ 0.83
PRKNO60260 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.23■□□□□ 0.83
PRKNO60260 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.23■□□□□ 0.83
PRKNO60260 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PRKNO60260 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PRKNO60260 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.22■□□□□ 0.83
PRKNO60260 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 AC012414.1-201ENST00000556676 535 ntBASIC20.22■□□□□ 0.83
PRKNO60260 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.22■□□□□ 0.83
PRKNO60260 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PRKNO60260 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PRKNO60260 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.22■□□□□ 0.83
PRKNO60260 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.21■□□□□ 0.83
PRKNO60260 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.21■□□□□ 0.83
PRKNO60260 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.21■□□□□ 0.83
PRKNO60260 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.21■□□□□ 0.83
PRKNO60260 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.21■□□□□ 0.83
PRKNO60260 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
PRKNO60260 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PRKNO60260 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PRKNO60260 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
PRKNO60260 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 AC105233.4-201ENST00000642045 216 ntBASIC20.2■□□□□ 0.82
PRKNO60260 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
PRKNO60260 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PRKNO60260 AC080038.3-201ENST00000623346 1952 ntBASIC20.19■□□□□ 0.82
PRKNO60260 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.19■□□□□ 0.82
PRKNO60260 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.19■□□□□ 0.82
PRKNO60260 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PRKNO60260 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.19■□□□□ 0.82
PRKNO60260 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PRKNO60260 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.19■□□□□ 0.82
PRKNO60260 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.19■□□□□ 0.82
PRKNO60260 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.19■□□□□ 0.82
PRKNO60260 AC087239.1-201ENST00000622671 572 ntBASIC20.19■□□□□ 0.82
PRKNO60260 AL358852.1-201ENST00000623174 1268 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms