Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
MSH4O15457 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
MSH4O15457 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH4O15457 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH4O15457 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
MSH4O15457 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
MSH4O15457 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH4O15457 AC027612.3-201ENST00000413684 1047 ntBASIC24.54■■□□□ 1.52
MSH4O15457 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
MSH4O15457 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH4O15457 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH4O15457 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
MSH4O15457 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.54■■□□□ 1.52
MSH4O15457 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH4O15457 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH4O15457 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.53■■□□□ 1.52
MSH4O15457 GALC-202ENST00000393568 2054 ntTSL 2 BASIC24.53■■□□□ 1.52
MSH4O15457 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
MSH4O15457 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.53■■□□□ 1.52
MSH4O15457 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH4O15457 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.53■■□□□ 1.52
MSH4O15457 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
MSH4O15457 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
MSH4O15457 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
MSH4O15457 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH4O15457 AC068473.5-201ENST00000616428 2072 ntBASIC24.52■■□□□ 1.52
MSH4O15457 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
MSH4O15457 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
MSH4O15457 LINC00526-201ENST00000581067 1875 ntBASIC24.52■■□□□ 1.52
MSH4O15457 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH4O15457 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
MSH4O15457 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.52■■□□□ 1.52
MSH4O15457 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
MSH4O15457 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.52■■□□□ 1.52
MSH4O15457 MIR6821-201ENST00000617625 74 ntBASIC24.52■■□□□ 1.52
MSH4O15457 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
MSH4O15457 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.51■■□□□ 1.51
MSH4O15457 AC097381.1-201ENST00000429019 1296 ntBASIC24.51■■□□□ 1.51
MSH4O15457 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24.51■■□□□ 1.51
MSH4O15457 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
MSH4O15457 ESRRAP2-201ENST00000418437 1549 ntBASIC24.51■■□□□ 1.51
MSH4O15457 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
MSH4O15457 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH4O15457 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
MSH4O15457 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
MSH4O15457 NT5C3AP1-201ENST00000394500 1012 ntBASIC24.49■■□□□ 1.51
MSH4O15457 YBX1P1-201ENST00000445822 960 ntBASIC24.49■■□□□ 1.51
MSH4O15457 AC087623.3-201ENST00000607047 1098 ntBASIC24.49■■□□□ 1.51
MSH4O15457 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
MSH4O15457 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH4O15457 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH4O15457 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH4O15457 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.49■■□□□ 1.51
MSH4O15457 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH4O15457 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
MSH4O15457 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.48■■□□□ 1.51
MSH4O15457 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.48■■□□□ 1.51
MSH4O15457 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.48■■□□□ 1.51
MSH4O15457 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC24.48■■□□□ 1.51
MSH4O15457 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.48■■□□□ 1.51
MSH4O15457 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC24.48■■□□□ 1.51
MSH4O15457 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.48■■□□□ 1.51
MSH4O15457 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.48■■□□□ 1.51
MSH4O15457 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
MSH4O15457 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.48■■□□□ 1.51
MSH4O15457 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
MSH4O15457 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.47■■□□□ 1.51
MSH4O15457 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
MSH4O15457 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.47■■□□□ 1.51
MSH4O15457 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
MSH4O15457 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 BX005040.4-201ENST00000637145 1518 ntBASIC24.46■■□□□ 1.51
MSH4O15457 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 AC139530.1-201ENST00000575312 1977 ntBASIC24.46■■□□□ 1.51
MSH4O15457 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.46■■□□□ 1.51
MSH4O15457 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
MSH4O15457 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms