Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.84■□□□□ 0.77
SHANK1Q9Y566 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.83■□□□□ 0.77
SHANK1Q9Y566 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SHANK1Q9Y566 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHANK1Q9Y566 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 DUX4L16-201ENST00000555130 1264 ntBASIC19.82■□□□□ 0.76
SHANK1Q9Y566 KRT18P6-201ENST00000555540 1265 ntBASIC19.82■□□□□ 0.76
SHANK1Q9Y566 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 AC011767.1-201ENST00000617410 1153 ntBASIC19.82■□□□□ 0.76
SHANK1Q9Y566 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHANK1Q9Y566 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHANK1Q9Y566 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 AC093827.2-201ENST00000512654 315 ntBASIC19.8■□□□□ 0.76
SHANK1Q9Y566 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.8■□□□□ 0.76
SHANK1Q9Y566 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SHANK1Q9Y566 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SHANK1Q9Y566 LINC01529-204ENST00000636474 1715 ntBASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms