Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
UPF3AQ9H1J1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.49■■□□□ 1.51
UPF3AQ9H1J1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 ABHD17AP1-201ENST00000358206 933 ntBASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC24.48■■□□□ 1.51
UPF3AQ9H1J1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.47■■□□□ 1.51
UPF3AQ9H1J1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 MFSD11-216ENST00000590393 1141 ntBASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
UPF3AQ9H1J1 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.45■■□□□ 1.51
UPF3AQ9H1J1 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.45■■□□□ 1.51
UPF3AQ9H1J1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
UPF3AQ9H1J1 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
UPF3AQ9H1J1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
UPF3AQ9H1J1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.44■■□□□ 1.5
UPF3AQ9H1J1 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
UPF3AQ9H1J1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
UPF3AQ9H1J1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.44■■□□□ 1.5
UPF3AQ9H1J1 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 GPX1P1-201ENST00000388829 606 ntBASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
UPF3AQ9H1J1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 AC005224.4-201ENST00000583262 1652 ntBASIC24.42■■□□□ 1.5
UPF3AQ9H1J1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 AC004812.2-201ENST00000611079 2094 ntBASIC24.41■■□□□ 1.5
UPF3AQ9H1J1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 AC142086.2-201ENST00000569753 217 ntBASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 AL050303.2-201ENST00000619798 666 ntBASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC24.4■■□□□ 1.5
UPF3AQ9H1J1 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
UPF3AQ9H1J1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
UPF3AQ9H1J1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.39■■□□□ 1.5
UPF3AQ9H1J1 KRT87P-202ENST00000534226 1464 ntBASIC24.39■■□□□ 1.5
UPF3AQ9H1J1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
UPF3AQ9H1J1 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.5
UPF3AQ9H1J1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC24.39■■□□□ 1.49
UPF3AQ9H1J1 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.39■■□□□ 1.49
UPF3AQ9H1J1 AC104187.1-201ENST00000607510 612 ntBASIC24.39■■□□□ 1.49
UPF3AQ9H1J1 AL139125.2-201ENST00000623134 1869 ntBASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.38■■□□□ 1.49
UPF3AQ9H1J1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms