Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.91■■□□□ 1.26
RNF139Q8WU17 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
RNF139Q8WU17 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
RNF139Q8WU17 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
RNF139Q8WU17 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.9■■□□□ 1.26
RNF139Q8WU17 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.9■■□□□ 1.26
RNF139Q8WU17 IRS3P-201ENST00000223076 1006 ntBASIC22.9■■□□□ 1.26
RNF139Q8WU17 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.9■■□□□ 1.26
RNF139Q8WU17 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.9■■□□□ 1.26
RNF139Q8WU17 AL031602.1-201ENST00000633169 911 ntBASIC22.9■■□□□ 1.26
RNF139Q8WU17 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF139Q8WU17 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF139Q8WU17 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF139Q8WU17 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
RNF139Q8WU17 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
RNF139Q8WU17 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.89■■□□□ 1.25
RNF139Q8WU17 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.89■■□□□ 1.25
RNF139Q8WU17 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
RNF139Q8WU17 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.89■■□□□ 1.25
RNF139Q8WU17 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.89■■□□□ 1.25
RNF139Q8WU17 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
RNF139Q8WU17 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
RNF139Q8WU17 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
RNF139Q8WU17 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.87■■□□□ 1.25
RNF139Q8WU17 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
RNF139Q8WU17 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.87■■□□□ 1.25
RNF139Q8WU17 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
RNF139Q8WU17 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
RNF139Q8WU17 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.87■■□□□ 1.25
RNF139Q8WU17 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.87■■□□□ 1.25
RNF139Q8WU17 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF139Q8WU17 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF139Q8WU17 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.86■■□□□ 1.25
RNF139Q8WU17 LINC01960-201ENST00000563759 1884 ntBASIC22.86■■□□□ 1.25
RNF139Q8WU17 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.86■■□□□ 1.25
RNF139Q8WU17 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF139Q8WU17 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF139Q8WU17 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.86■■□□□ 1.25
RNF139Q8WU17 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF139Q8WU17 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF139Q8WU17 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
RNF139Q8WU17 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
RNF139Q8WU17 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
RNF139Q8WU17 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 AC010141.3-201ENST00000456659 717 ntBASIC22.85■■□□□ 1.25
RNF139Q8WU17 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
RNF139Q8WU17 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.85■■□□□ 1.25
RNF139Q8WU17 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
RNF139Q8WU17 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
RNF139Q8WU17 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF139Q8WU17 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.83■■□□□ 1.25
RNF139Q8WU17 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF139Q8WU17 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF139Q8WU17 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
RNF139Q8WU17 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF139Q8WU17 MIR572-201ENST00000384983 95 ntBASIC22.83■■□□□ 1.25
RNF139Q8WU17 MIR935-201ENST00000401179 91 ntBASIC22.83■■□□□ 1.25
RNF139Q8WU17 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
RNF139Q8WU17 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
RNF139Q8WU17 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
RNF139Q8WU17 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.83■■□□□ 1.24
RNF139Q8WU17 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF139Q8WU17 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
RNF139Q8WU17 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.82■■□□□ 1.24
RNF139Q8WU17 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
RNF139Q8WU17 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
RNF139Q8WU17 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
RNF139Q8WU17 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF139Q8WU17 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF139Q8WU17 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
RNF139Q8WU17 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
RNF139Q8WU17 LHPP-203ENST00000392757 840 ntTSL 3 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms