Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 DUX4L2-201ENST00000561772 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4L6-201ENST00000626483 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4L1-201ENST00000627662 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4L8-201ENST00000629013 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4L3-201ENST00000630187 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4L7-201ENST00000630678 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 DUX4L5-201ENST00000630834 1275 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 AC133561.1-201ENST00000568600 2415 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 AC068473.5-201ENST00000616428 2072 ntBASIC25.99■■□□□ 1.75
NKX2-3Q8TAU0 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 AC087742.1-201ENST00000575880 1738 ntBASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.98■■□□□ 1.75
NKX2-3Q8TAU0 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 AL031602.1-201ENST00000633169 911 ntBASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC25.97■■□□□ 1.75
NKX2-3Q8TAU0 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
NKX2-3Q8TAU0 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
NKX2-3Q8TAU0 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX2-3Q8TAU0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
NKX2-3Q8TAU0 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC25.95■■□□□ 1.74
NKX2-3Q8TAU0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX2-3Q8TAU0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
NKX2-3Q8TAU0 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 GXYLT1P2-201ENST00000433312 1230 ntBASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 AC123595.1-201ENST00000440769 1046 ntBASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC25.94■■□□□ 1.74
NKX2-3Q8TAU0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
NKX2-3Q8TAU0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 HLA-L-209ENST00000420110 1011 ntBASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
NKX2-3Q8TAU0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
NKX2-3Q8TAU0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NKX2-3Q8TAU0 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
NKX2-3Q8TAU0 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC25.91■■□□□ 1.74
NKX2-3Q8TAU0 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25.9■■□□□ 1.74
NKX2-3Q8TAU0 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.9■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms