Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC27.77■■■□□ 2.04
RFC4P35249 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RFC4P35249 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RFC4P35249 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
RFC4P35249 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
RFC4P35249 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC27.76■■■□□ 2.03
RFC4P35249 AC007322.1-201ENST00000426983 750 ntBASIC27.76■■■□□ 2.03
RFC4P35249 GUSBP6-202ENST00000438529 1198 ntBASIC27.76■■■□□ 2.03
RFC4P35249 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
RFC4P35249 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC27.76■■■□□ 2.03
RFC4P35249 AC005181.1-201ENST00000604782 1256 ntBASIC27.76■■■□□ 2.03
RFC4P35249 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.76■■■□□ 2.03
RFC4P35249 AC138932.3-201ENST00000567634 1902 ntBASIC27.76■■■□□ 2.03
RFC4P35249 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
RFC4P35249 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
RFC4P35249 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.75■■■□□ 2.03
RFC4P35249 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
RFC4P35249 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.75■■■□□ 2.03
RFC4P35249 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
RFC4P35249 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.75■■■□□ 2.03
RFC4P35249 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC27.75■■■□□ 2.03
RFC4P35249 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
RFC4P35249 KRT87P-202ENST00000534226 1464 ntBASIC27.75■■■□□ 2.03
RFC4P35249 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.74■■■□□ 2.03
RFC4P35249 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC27.74■■■□□ 2.03
RFC4P35249 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
RFC4P35249 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC27.74■■■□□ 2.03
RFC4P35249 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
RFC4P35249 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC27.74■■■□□ 2.03
RFC4P35249 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.74■■■□□ 2.03
RFC4P35249 AL138781.1-201ENST00000566567 1274 ntBASIC27.74■■■□□ 2.03
RFC4P35249 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC27.74■■■□□ 2.03
RFC4P35249 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.74■■■□□ 2.03
RFC4P35249 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.74■■■□□ 2.03
RFC4P35249 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
RFC4P35249 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC27.73■■■□□ 2.03
RFC4P35249 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RFC4P35249 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC27.73■■■□□ 2.03
RFC4P35249 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RFC4P35249 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RFC4P35249 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
RFC4P35249 PARP1-202ENST00000366792 553 ntTSL 3 BASIC27.73■■■□□ 2.03
RFC4P35249 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.73■■■□□ 2.03
RFC4P35249 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC27.73■■■□□ 2.03
RFC4P35249 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RFC4P35249 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
RFC4P35249 USP45-205ENST00000472914 1617 ntTSL 5 BASIC27.73■■■□□ 2.03
RFC4P35249 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RFC4P35249 AC005224.4-201ENST00000583262 1652 ntBASIC27.72■■■□□ 2.03
RFC4P35249 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
RFC4P35249 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RFC4P35249 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RFC4P35249 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RFC4P35249 AL353803.4-201ENST00000565882 1934 ntBASIC27.72■■■□□ 2.03
RFC4P35249 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC27.72■■■□□ 2.03
RFC4P35249 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RFC4P35249 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RFC4P35249 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
RFC4P35249 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
RFC4P35249 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
RFC4P35249 SLC29A4P1-201ENST00000398760 971 ntBASIC27.71■■■□□ 2.03
RFC4P35249 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
RFC4P35249 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC27.71■■■□□ 2.03
RFC4P35249 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.71■■■□□ 2.03
RFC4P35249 UBE2DNL-204ENST00000602536 740 ntBASIC27.71■■■□□ 2.03
RFC4P35249 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.03
RFC4P35249 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
RFC4P35249 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
RFC4P35249 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
RFC4P35249 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC27.7■■■□□ 2.02
RFC4P35249 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC27.7■■■□□ 2.02
RFC4P35249 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.7■■■□□ 2.02
RFC4P35249 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.7■■■□□ 2.02
RFC4P35249 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC27.7■■■□□ 2.02
RFC4P35249 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.7■■■□□ 2.02
RFC4P35249 AC142381.3-201ENST00000568208 1670 ntBASIC27.7■■■□□ 2.02
RFC4P35249 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.7■■■□□ 2.02
RFC4P35249 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
RFC4P35249 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
RFC4P35249 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC27.69■■■□□ 2.02
RFC4P35249 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC27.69■■■□□ 2.02
RFC4P35249 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.69■■■□□ 2.02
RFC4P35249 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.69■■■□□ 2.02
RFC4P35249 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.69■■■□□ 2.02
RFC4P35249 MIR4651-201ENST00000582622 73 ntBASIC27.69■■■□□ 2.02
RFC4P35249 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC27.69■■■□□ 2.02
RFC4P35249 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
RFC4P35249 MED17-227ENST00000640521 2047 ntTSL 5 BASIC27.68■■■□□ 2.02
RFC4P35249 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
RFC4P35249 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC27.68■■■□□ 2.02
RFC4P35249 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC27.68■■■□□ 2.02
RFC4P35249 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
RFC4P35249 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
RFC4P35249 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
RFC4P35249 AC009237.3-201ENST00000393279 1427 ntBASIC27.67■■■□□ 2.02
RFC4P35249 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
RFC4P35249 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
RFC4P35249 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
RFC4P35249 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
RFC4P35249 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC27.67■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms