Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CIITAP33076 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CIITAP33076 AC105233.4-201ENST00000642045 216 ntBASIC24.69■■□□□ 1.54
CIITAP33076 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CIITAP33076 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CIITAP33076 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CIITAP33076 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CIITAP33076 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CIITAP33076 AK1-201ENST00000223836 736 ntTSL 3 BASIC24.68■■□□□ 1.54
CIITAP33076 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.68■■□□□ 1.54
CIITAP33076 AC079089.2-201ENST00000531211 1277 ntBASIC24.68■■□□□ 1.54
CIITAP33076 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.68■■□□□ 1.54
CIITAP33076 SMUG1P1-201ENST00000590640 811 ntBASIC24.68■■□□□ 1.54
CIITAP33076 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.54
CIITAP33076 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC24.68■■□□□ 1.54
CIITAP33076 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC24.68■■□□□ 1.54
CIITAP33076 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CIITAP33076 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CIITAP33076 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CIITAP33076 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.67■■□□□ 1.54
CIITAP33076 ESRRAP2-201ENST00000418437 1549 ntBASIC24.67■■□□□ 1.54
CIITAP33076 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CIITAP33076 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
CIITAP33076 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CIITAP33076 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CIITAP33076 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
CIITAP33076 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC24.67■■□□□ 1.54
CIITAP33076 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.67■■□□□ 1.54
CIITAP33076 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CIITAP33076 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CIITAP33076 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CIITAP33076 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CIITAP33076 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
CIITAP33076 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
CIITAP33076 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CIITAP33076 AC026271.2-201ENST00000428091 497 ntBASIC24.66■■□□□ 1.54
CIITAP33076 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.66■■□□□ 1.54
CIITAP33076 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.66■■□□□ 1.54
CIITAP33076 C1orf229-201ENST00000623686 2258 ntBASIC24.66■■□□□ 1.54
CIITAP33076 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
CIITAP33076 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
CIITAP33076 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
CIITAP33076 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CIITAP33076 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CIITAP33076 AC137767.1-201ENST00000602918 1920 ntBASIC24.65■■□□□ 1.54
CIITAP33076 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CIITAP33076 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CIITAP33076 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
CIITAP33076 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.65■■□□□ 1.54
CIITAP33076 AC027612.3-201ENST00000413684 1047 ntBASIC24.65■■□□□ 1.54
CIITAP33076 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.65■■□□□ 1.54
CIITAP33076 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
CIITAP33076 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.65■■□□□ 1.54
CIITAP33076 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC24.65■■□□□ 1.54
CIITAP33076 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
CIITAP33076 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CIITAP33076 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
CIITAP33076 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
CIITAP33076 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.64■■□□□ 1.54
CIITAP33076 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
CIITAP33076 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
CIITAP33076 MIR935-201ENST00000401179 91 ntBASIC24.64■■□□□ 1.54
CIITAP33076 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.64■■□□□ 1.54
CIITAP33076 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CIITAP33076 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
CIITAP33076 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
CIITAP33076 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
CIITAP33076 MPST-204ENST00000404393 1329 ntTSL 5 BASIC24.63■■□□□ 1.53
CIITAP33076 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CIITAP33076 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CIITAP33076 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.63■■□□□ 1.53
CIITAP33076 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CIITAP33076 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC24.63■■□□□ 1.53
CIITAP33076 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
CIITAP33076 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.63■■□□□ 1.53
CIITAP33076 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CIITAP33076 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.62■■□□□ 1.53
CIITAP33076 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.62■■□□□ 1.53
CIITAP33076 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.62■■□□□ 1.53
CIITAP33076 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CIITAP33076 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CIITAP33076 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
CIITAP33076 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CIITAP33076 AC097381.1-201ENST00000429019 1296 ntBASIC24.61■■□□□ 1.53
CIITAP33076 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC24.61■■□□□ 1.53
CIITAP33076 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.61■■□□□ 1.53
CIITAP33076 RARRES2P6-201ENST00000567333 442 ntBASIC24.61■■□□□ 1.53
CIITAP33076 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.61■■□□□ 1.53
CIITAP33076 MIR6821-201ENST00000617625 74 ntBASIC24.61■■□□□ 1.53
CIITAP33076 MIR6084-201ENST00000622012 110 ntBASIC24.61■■□□□ 1.53
CIITAP33076 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms