Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HLA-DMBP28068 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.59■□□□□ 0.25
HLA-DMBP28068 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.58■□□□□ 0.25
HLA-DMBP28068 AL137060.1-201ENST00000618151 2648 ntBASIC16.58■□□□□ 0.25
HLA-DMBP28068 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DMBP28068 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.58■□□□□ 0.24
HLA-DMBP28068 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DMBP28068 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DMBP28068 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DMBP28068 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.58■□□□□ 0.24
HLA-DMBP28068 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HLA-DMBP28068 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
HLA-DMBP28068 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 AC008406.3-201ENST00000620001 1374 ntBASIC16.57■□□□□ 0.24
HLA-DMBP28068 TFPT-201ENST00000391757 774 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 EXOG-217ENST00000630638 197 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.57■□□□□ 0.24
HLA-DMBP28068 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HLA-DMBP28068 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DMBP28068 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.56■□□□□ 0.24
HLA-DMBP28068 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
HLA-DMBP28068 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.56■□□□□ 0.24
HLA-DMBP28068 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
HLA-DMBP28068 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HLA-DMBP28068 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
HLA-DMBP28068 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 C17orf82-201ENST00000623772 1530 ntBASIC16.55■□□□□ 0.24
HLA-DMBP28068 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.55■□□□□ 0.24
HLA-DMBP28068 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DMBP28068 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DMBP28068 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 MTURN-203ENST00000409688 843 ntTSL 2 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DMBP28068 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DMBP28068 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HLA-DMBP28068 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HLA-DMBP28068 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DMBP28068 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DMBP28068 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DMBP28068 MIR6724-1-201ENST00000616420 92 ntBASIC16.53■□□□□ 0.24
HLA-DMBP28068 MIR6724-2-201ENST00000616483 92 ntBASIC16.53■□□□□ 0.24
HLA-DMBP28068 MIR6724-4-201ENST00000617390 92 ntBASIC16.53■□□□□ 0.24
HLA-DMBP28068 MIR6724-3-201ENST00000622482 92 ntBASIC16.53■□□□□ 0.24
HLA-DMBP28068 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HLA-DMBP28068 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
HLA-DMBP28068 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms