Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SIX3O95343 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX3O95343 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
SIX3O95343 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX3O95343 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX3O95343 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.33■■□□□ 1.01
SIX3O95343 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
SIX3O95343 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX3O95343 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SIX3O95343 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.33■■□□□ 1.01
SIX3O95343 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.33■■□□□ 1
SIX3O95343 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SIX3O95343 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
SIX3O95343 CA15P2-201ENST00000611168 834 ntBASIC21.32■■□□□ 1
SIX3O95343 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SIX3O95343 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.32■■□□□ 1
SIX3O95343 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.32■■□□□ 1
SIX3O95343 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.32■■□□□ 1
SIX3O95343 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SIX3O95343 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.31■■□□□ 1
SIX3O95343 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.31■■□□□ 1
SIX3O95343 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.31■■□□□ 1
SIX3O95343 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.31■■□□□ 1
SIX3O95343 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.31■■□□□ 1
SIX3O95343 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.31■■□□□ 1
SIX3O95343 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.31■■□□□ 1
SIX3O95343 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.31■■□□□ 1
SIX3O95343 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.31■■□□□ 1
SIX3O95343 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.3■■□□□ 1
SIX3O95343 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.3■■□□□ 1
SIX3O95343 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.3■■□□□ 1
SIX3O95343 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.3■■□□□ 1
SIX3O95343 AC241377.3-202ENST00000626088 1088 ntBASIC21.3■■□□□ 1
SIX3O95343 AC241585.3-202ENST00000628937 1088 ntBASIC21.3■■□□□ 1
SIX3O95343 AC245100.8-202ENST00000629247 1058 ntBASIC21.3■■□□□ 1
SIX3O95343 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SIX3O95343 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
SIX3O95343 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SIX3O95343 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.29■■□□□ 1
SIX3O95343 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX3O95343 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.29■■□□□ 1
SIX3O95343 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SIX3O95343 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SIX3O95343 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
SIX3O95343 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.29■■□□□ 1
SIX3O95343 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.29■■□□□ 1
SIX3O95343 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.29■■□□□ 1
SIX3O95343 AC099791.2-201ENST00000605725 427 ntBASIC21.29■■□□□ 1
SIX3O95343 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SIX3O95343 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.29■■□□□ 1
SIX3O95343 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.29■■□□□ 1
SIX3O95343 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.29■■□□□ 1
SIX3O95343 AL137060.1-201ENST00000618151 2648 ntBASIC21.28■■□□□ 1
SIX3O95343 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX3O95343 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
SIX3O95343 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX3O95343 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SIX3O95343 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX3O95343 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SIX3O95343 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SIX3O95343 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX3O95343 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
SIX3O95343 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.28■■□□□ 1
SIX3O95343 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.28■■□□□ 1
SIX3O95343 AL356740.2-201ENST00000601559 647 ntBASIC21.28■■□□□ 1
SIX3O95343 pRNA.6-201ENST00000610482 90 ntBASIC21.28■■□□□ 1
SIX3O95343 pRNA.5-201ENST00000612139 90 ntBASIC21.28■■□□□ 1
SIX3O95343 pRNA.11-201ENST00000618423 90 ntBASIC21.28■■□□□ 1
SIX3O95343 pRNA.13-201ENST00000619112 90 ntBASIC21.28■■□□□ 1
SIX3O95343 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.28■■□□□ 1
SIX3O95343 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX3O95343 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.27■■□□□ 1
SIX3O95343 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX3O95343 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX3O95343 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX3O95343 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SIX3O95343 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.27■■□□□ 1
SIX3O95343 MIR3621-201ENST00000580529 85 ntBASIC21.27■■□□□ 1
SIX3O95343 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.27■■□□□ 1
SIX3O95343 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.27■■□□□ 1
SIX3O95343 AC133637.1-201ENST00000624115 1537 ntBASIC21.27■■□□□ 1
SIX3O95343 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
SIX3O95343 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SIX3O95343 AC010542.4-201ENST00000563151 1910 ntBASIC21.27■■□□□ 1
SIX3O95343 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
SIX3O95343 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX3O95343 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms