Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.36■■□□□ 1.01
VPS4BO75351 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 UNC93B3-201ENST00000308076 687 ntBASIC21.36■■□□□ 1.01
VPS4BO75351 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS4BO75351 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.36■■□□□ 1.01
VPS4BO75351 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
VPS4BO75351 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS4BO75351 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.36■■□□□ 1.01
VPS4BO75351 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VPS4BO75351 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS4BO75351 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS4BO75351 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS4BO75351 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS4BO75351 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VPS4BO75351 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS4BO75351 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS4BO75351 AL136162.1-201ENST00000607711 1078 ntBASIC21.35■■□□□ 1.01
VPS4BO75351 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS4BO75351 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS4BO75351 AC080038.3-201ENST00000623346 1952 ntBASIC21.35■■□□□ 1.01
VPS4BO75351 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS4BO75351 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
VPS4BO75351 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS4BO75351 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS4BO75351 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS4BO75351 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
VPS4BO75351 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS4BO75351 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS4BO75351 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS4BO75351 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS4BO75351 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS4BO75351 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS4BO75351 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS4BO75351 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS4BO75351 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS4BO75351 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS4BO75351 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.33■■□□□ 1.01
VPS4BO75351 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS4BO75351 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.33■■□□□ 1
VPS4BO75351 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
VPS4BO75351 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
VPS4BO75351 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS4BO75351 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS4BO75351 AC005703.6-201ENST00000623265 1329 ntBASIC21.32■■□□□ 1
VPS4BO75351 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS4BO75351 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS4BO75351 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS4BO75351 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.32■■□□□ 1
VPS4BO75351 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.32■■□□□ 1
VPS4BO75351 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.32■■□□□ 1
VPS4BO75351 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS4BO75351 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS4BO75351 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS4BO75351 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
VPS4BO75351 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.31■■□□□ 1
VPS4BO75351 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.31■■□□□ 1
VPS4BO75351 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.31■■□□□ 1
VPS4BO75351 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 SUDS3P1-201ENST00000505831 966 ntBASIC21.31■■□□□ 1
VPS4BO75351 MIR6722-201ENST00000617286 78 ntBASIC21.31■■□□□ 1
VPS4BO75351 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.31■■□□□ 1
VPS4BO75351 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
VPS4BO75351 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
VPS4BO75351 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.31■■□□□ 1
VPS4BO75351 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
VPS4BO75351 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS4BO75351 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS4BO75351 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.3■■□□□ 1
VPS4BO75351 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS4BO75351 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS4BO75351 AL355001.2-201ENST00000620617 1191 ntBASIC21.3■■□□□ 1
VPS4BO75351 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS4BO75351 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
VPS4BO75351 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS4BO75351 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.29■■□□□ 1
VPS4BO75351 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS4BO75351 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS4BO75351 EDA-201ENST00000338901 1233 ntBASIC21.29■■□□□ 1
VPS4BO75351 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.29■■□□□ 1
VPS4BO75351 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.29■■□□□ 1
VPS4BO75351 AC009086.3-201ENST00000623486 1008 ntBASIC21.29■■□□□ 1
VPS4BO75351 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS4BO75351 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms