Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGB3O15347 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC17.56■□□□□ 0.4
HMGB3O15347 ECEL1P2-201ENST00000461596 1295 ntBASIC17.56■□□□□ 0.4
HMGB3O15347 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HMGB3O15347 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
HMGB3O15347 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
HMGB3O15347 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB3O15347 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC17.56■□□□□ 0.4
HMGB3O15347 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HMGB3O15347 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HMGB3O15347 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.55■□□□□ 0.4
HMGB3O15347 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HMGB3O15347 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HMGB3O15347 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HMGB3O15347 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
HMGB3O15347 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HMGB3O15347 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HMGB3O15347 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
HMGB3O15347 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGB3O15347 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGB3O15347 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.54■□□□□ 0.4
HMGB3O15347 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGB3O15347 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGB3O15347 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
HMGB3O15347 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HMGB3O15347 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
HMGB3O15347 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HMGB3O15347 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HMGB3O15347 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGB3O15347 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HMGB3O15347 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 AL022069.1-201ENST00000568025 1636 ntBASIC17.53■□□□□ 0.4
HMGB3O15347 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HMGB3O15347 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGB3O15347 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HMGB3O15347 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGB3O15347 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 RAP2CP1-202ENST00000605179 643 ntBASIC17.52■□□□□ 0.4
HMGB3O15347 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGB3O15347 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB3O15347 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB3O15347 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC17.52■□□□□ 0.39
HMGB3O15347 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB3O15347 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
HMGB3O15347 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGB3O15347 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB3O15347 AC080038.3-201ENST00000623346 1952 ntBASIC17.51■□□□□ 0.39
HMGB3O15347 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGB3O15347 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HMGB3O15347 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGB3O15347 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms