Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 DUSP8P5-201ENST00000422884 1815 ntBASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 CCDC92B-201ENST00000575506 885 ntBASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 LINC02228-203ENST00000641970 1355 ntBASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 ABCB10P4-201ENST00000566803 2184 ntBASIC24.01■■□□□ 1.43
TRAIPQ9BWF2 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24■■□□□ 1.43
TRAIPQ9BWF2 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
TRAIPQ9BWF2 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24■■□□□ 1.43
TRAIPQ9BWF2 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24■■□□□ 1.43
TRAIPQ9BWF2 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC24■■□□□ 1.43
TRAIPQ9BWF2 AC105233.4-201ENST00000642045 216 ntBASIC24■■□□□ 1.43
TRAIPQ9BWF2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
TRAIPQ9BWF2 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC24■■□□□ 1.43
TRAIPQ9BWF2 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TRAIPQ9BWF2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
TRAIPQ9BWF2 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24■■□□□ 1.43
TRAIPQ9BWF2 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
TRAIPQ9BWF2 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 AC022517.1-201ENST00000592429 346 ntBASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
TRAIPQ9BWF2 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 AC004687.1-201ENST00000579003 1625 ntBASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC23.97■■□□□ 1.43
TRAIPQ9BWF2 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC23.96■■□□□ 1.43
TRAIPQ9BWF2 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TRAIPQ9BWF2 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TRAIPQ9BWF2 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.96■■□□□ 1.43
TRAIPQ9BWF2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
TRAIPQ9BWF2 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 KRT18P14-201ENST00000534205 1250 ntBASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TRAIPQ9BWF2 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
TRAIPQ9BWF2 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms