Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.45■■□□□ 1.02
LMX1AQ8TE12 TPRG1LP1-201ENST00000598702 760 ntBASIC21.45■■□□□ 1.02
LMX1AQ8TE12 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LMX1AQ8TE12 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LMX1AQ8TE12 BX005040.4-201ENST00000637145 1518 ntBASIC21.45■■□□□ 1.02
LMX1AQ8TE12 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
LMX1AQ8TE12 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LMX1AQ8TE12 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LMX1AQ8TE12 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LMX1AQ8TE12 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.42■■□□□ 1.02
LMX1AQ8TE12 SMUG1P1-201ENST00000590640 811 ntBASIC21.42■■□□□ 1.02
LMX1AQ8TE12 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.42■■□□□ 1.02
LMX1AQ8TE12 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LMX1AQ8TE12 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.4■■□□□ 1.02
LMX1AQ8TE12 OXCT2P1-201ENST00000447263 1535 ntBASIC21.39■■□□□ 1.02
LMX1AQ8TE12 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
LMX1AQ8TE12 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
LMX1AQ8TE12 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.38■■□□□ 1.01
LMX1AQ8TE12 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1AQ8TE12 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1AQ8TE12 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1AQ8TE12 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1AQ8TE12 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LMX1AQ8TE12 KRT18P61-201ENST00000585825 1298 ntBASIC21.38■■□□□ 1.01
LMX1AQ8TE12 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms