Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 AC006058.3-201ENST00000606217 1069 ntBASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
SMC1BQ8NDV3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 AC128676.1-201ENST00000454392 318 ntBASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 KRT87P-202ENST00000534226 1464 ntBASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC1BQ8NDV3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 AC008550.1-201ENST00000511500 884 ntBASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 USP36-216ENST00000589424 970 ntTSL 5 BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 AC073912.3-201ENST00000624414 853 ntBASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SMC1BQ8NDV3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 AC142086.6-201ENST00000621154 1765 ntBASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 MMD2-204ENST00000612910 778 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC1BQ8NDV3 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC1BQ8NDV3 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC1BQ8NDV3 MKRN4P-201ENST00000444706 1521 ntBASIC26.25■■□□□ 1.79
SMC1BQ8NDV3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC1BQ8NDV3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC1BQ8NDV3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC26.24■■□□□ 1.79
SMC1BQ8NDV3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 MARS-235ENST00000630803 183 ntTSL 3 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.23■■□□□ 1.79
SMC1BQ8NDV3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC26.22■■□□□ 1.79
SMC1BQ8NDV3 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC26.22■■□□□ 1.79
SMC1BQ8NDV3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SMC1BQ8NDV3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC1BQ8NDV3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC1BQ8NDV3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 MMAB-206ENST00000540016 945 ntTSL 3 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC26.21■■□□□ 1.79
SMC1BQ8NDV3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms