Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
LRRC28Q86X40 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRRC28Q86X40 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LRRC28Q86X40 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LRRC28Q86X40 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LRRC28Q86X40 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.4■□□□□ 0.7
LRRC28Q86X40 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.4■□□□□ 0.7
LRRC28Q86X40 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
LRRC28Q86X40 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LRRC28Q86X40 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.4■□□□□ 0.7
LRRC28Q86X40 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.4■□□□□ 0.7
LRRC28Q86X40 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LRRC28Q86X40 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LRRC28Q86X40 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.39■□□□□ 0.7
LRRC28Q86X40 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.39■□□□□ 0.69
LRRC28Q86X40 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.39■□□□□ 0.69
LRRC28Q86X40 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.39■□□□□ 0.69
LRRC28Q86X40 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.39■□□□□ 0.69
LRRC28Q86X40 AC010997.5-201ENST00000609182 354 ntBASIC19.39■□□□□ 0.69
LRRC28Q86X40 AC131212.1-201ENST00000613771 668 ntBASIC19.39■□□□□ 0.69
LRRC28Q86X40 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LRRC28Q86X40 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LRRC28Q86X40 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRRC28Q86X40 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRRC28Q86X40 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRRC28Q86X40 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRRC28Q86X40 ALDH1A3-203ENST00000557963 1670 ntBASIC19.38■□□□□ 0.69
LRRC28Q86X40 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.38■□□□□ 0.69
LRRC28Q86X40 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRRC28Q86X40 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LRRC28Q86X40 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRRC28Q86X40 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRRC28Q86X40 AC079630.1-202ENST00000618127 1840 ntBASIC19.37■□□□□ 0.69
LRRC28Q86X40 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.37■□□□□ 0.69
LRRC28Q86X40 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LRRC28Q86X40 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 MTDHP2-201ENST00000601468 714 ntBASIC19.37■□□□□ 0.69
LRRC28Q86X40 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LRRC28Q86X40 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LRRC28Q86X40 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.36■□□□□ 0.69
LRRC28Q86X40 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
LRRC28Q86X40 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.36■□□□□ 0.69
LRRC28Q86X40 SNX5-217ENST00000606557 1087 ntBASIC19.36■□□□□ 0.69
LRRC28Q86X40 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LRRC28Q86X40 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.35■□□□□ 0.69
LRRC28Q86X40 AC080038.3-201ENST00000623346 1952 ntBASIC19.35■□□□□ 0.69
LRRC28Q86X40 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.35■□□□□ 0.69
LRRC28Q86X40 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
LRRC28Q86X40 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.35■□□□□ 0.69
LRRC28Q86X40 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LRRC28Q86X40 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
LRRC28Q86X40 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.34■□□□□ 0.69
LRRC28Q86X40 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
LRRC28Q86X40 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LRRC28Q86X40 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LRRC28Q86X40 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms