Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
NPHP3Q7Z494 AC135731.1-201ENST00000569415 2548 ntBASIC30.17■■■□□ 2.42
NPHP3Q7Z494 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP3Q7Z494 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC30.17■■■□□ 2.42
NPHP3Q7Z494 AC104187.1-201ENST00000607510 612 ntBASIC30.17■■■□□ 2.42
NPHP3Q7Z494 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC30.17■■■□□ 2.42
NPHP3Q7Z494 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC30.16■■■□□ 2.42
NPHP3Q7Z494 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP3Q7Z494 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP3Q7Z494 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
NPHP3Q7Z494 DET1-205ENST00000558413 583 ntTSL 4 BASIC30.15■■■□□ 2.42
NPHP3Q7Z494 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC30.15■■■□□ 2.42
NPHP3Q7Z494 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NPHP3Q7Z494 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
NPHP3Q7Z494 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
NPHP3Q7Z494 AC004687.1-201ENST00000579003 1625 ntBASIC30.14■■■□□ 2.42
NPHP3Q7Z494 AC073210.2-201ENST00000430369 194 ntBASIC30.14■■■□□ 2.42
NPHP3Q7Z494 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC30.14■■■□□ 2.42
NPHP3Q7Z494 KRT87P-202ENST00000534226 1464 ntBASIC30.14■■■□□ 2.41
NPHP3Q7Z494 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 PARP1-202ENST00000366792 553 ntTSL 3 BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 UBE2DNL-204ENST00000602536 740 ntBASIC30.13■■■□□ 2.41
NPHP3Q7Z494 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP3Q7Z494 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 AC008687.6-201ENST00000596318 630 ntBASIC30.12■■■□□ 2.41
NPHP3Q7Z494 AC133041.1-202ENST00000642053 222 ntBASIC30.12■■■□□ 2.41
NPHP3Q7Z494 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP3Q7Z494 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP3Q7Z494 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 TBCB-214ENST00000629269 413 ntTSL 5 BASIC30.1■■■□□ 2.41
NPHP3Q7Z494 AP003733.4-201ENST00000623785 1697 ntBASIC30.1■■■□□ 2.41
NPHP3Q7Z494 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP3Q7Z494 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP3Q7Z494 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC30.09■■■□□ 2.41
NPHP3Q7Z494 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC30.09■■■□□ 2.41
NPHP3Q7Z494 OXCT2P1-201ENST00000447263 1535 ntBASIC30.09■■■□□ 2.41
NPHP3Q7Z494 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC30.09■■■□□ 2.41
NPHP3Q7Z494 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC30.09■■■□□ 2.41
NPHP3Q7Z494 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC30.08■■■□□ 2.41
NPHP3Q7Z494 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC30.08■■■□□ 2.41
NPHP3Q7Z494 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP3Q7Z494 ASL-203ENST00000380839 1765 ntTSL 5 BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 MYCNOS-205ENST00000641950 531 ntBASIC30.07■■■□□ 2.4
NPHP3Q7Z494 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP3Q7Z494 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
NPHP3Q7Z494 AC005224.4-201ENST00000583262 1652 ntBASIC30.06■■■□□ 2.4
NPHP3Q7Z494 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
NPHP3Q7Z494 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms