Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
USF3Q68DE3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USF3Q68DE3 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.83■□□□□ 0.6
USF3Q68DE3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.82■□□□□ 0.6
USF3Q68DE3 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
USF3Q68DE3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.82■□□□□ 0.6
USF3Q68DE3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.82■□□□□ 0.6
USF3Q68DE3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.82■□□□□ 0.6
USF3Q68DE3 OR2I1P-207ENST00000453522 948 ntBASIC18.82■□□□□ 0.6
USF3Q68DE3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USF3Q68DE3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 LINC01529-204ENST00000636474 1715 ntBASIC18.81■□□□□ 0.6
USF3Q68DE3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.81■□□□□ 0.6
USF3Q68DE3 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.81■□□□□ 0.6
USF3Q68DE3 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USF3Q68DE3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.81■□□□□ 0.6
USF3Q68DE3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.81■□□□□ 0.6
USF3Q68DE3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
USF3Q68DE3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.81■□□□□ 0.6
USF3Q68DE3 AC016769.1-201ENST00000409132 1010 ntBASIC18.81■□□□□ 0.6
USF3Q68DE3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.81■□□□□ 0.6
USF3Q68DE3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
USF3Q68DE3 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USF3Q68DE3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.8■□□□□ 0.6
USF3Q68DE3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.8■□□□□ 0.6
USF3Q68DE3 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.8■□□□□ 0.6
USF3Q68DE3 KRT18P61-201ENST00000585825 1298 ntBASIC18.8■□□□□ 0.6
USF3Q68DE3 DUSP8P5-201ENST00000422884 1815 ntBASIC18.8■□□□□ 0.6
USF3Q68DE3 AC068473.5-201ENST00000616428 2072 ntBASIC18.8■□□□□ 0.6
USF3Q68DE3 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
USF3Q68DE3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USF3Q68DE3 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.8■□□□□ 0.6
USF3Q68DE3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USF3Q68DE3 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.8■□□□□ 0.6
USF3Q68DE3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.79■□□□□ 0.6
USF3Q68DE3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.79■□□□□ 0.6
USF3Q68DE3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.79■□□□□ 0.6
USF3Q68DE3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
USF3Q68DE3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.79■□□□□ 0.6
USF3Q68DE3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USF3Q68DE3 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.79■□□□□ 0.6
USF3Q68DE3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USF3Q68DE3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
USF3Q68DE3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USF3Q68DE3 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.78■□□□□ 0.6
USF3Q68DE3 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.78■□□□□ 0.6
USF3Q68DE3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.78■□□□□ 0.6
USF3Q68DE3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.78■□□□□ 0.6
USF3Q68DE3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USF3Q68DE3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.78■□□□□ 0.6
USF3Q68DE3 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
USF3Q68DE3 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms